|
|
FretEfficiency (PLMD::isdb) |
ParabetaRMSD (PLMD::secondarystructure) |
| leptonSwitch::funcAndDeriv (PLMD::switchContainers) |
ParsedExpression (PLMD::lepton) |
| ABMD (PLMD::bias) |
FuncPathGeneral (PLMD::function) |
Parser (PLMD::lepton) |
| Accelerator (PLMD) |
FuncPathMSD (PLMD::function) |
ParseToken (PLMD::lepton) |
| GridBase::AcceleratorBase (PLMD) |
FuncSumHills (PLMD::function) |
Path (PLMD::mapping) |
| GridBase::AcceleratorHandler (PLMD) |
Function (PLMD::function) |
PathDisplacements (PLMD::mapping) |
| Accumulate (PLMD::generic) |
FunctionOfGrid (PLMD::gridtools) |
PathMSD (PLMD::colvar) |
| Action (PLMD) |
FunctionOfMatrix (PLMD::function) |
PathMSDBase (PLMD::colvar) |
| ActionAnyorder (PLMD) |
FunctionOfScalar (PLMD::function) |
PathProjectionCalculator (PLMD::mapping) |
| ActionAtomistic (PLMD) |
FunctionOfVector (PLMD::function) |
PathReparameterization (PLMD::mapping) |
| ActionForInterface (PLMD) |
FunctionShortcut (PLMD::function) |
PathTools (PLMD::mapping) |
| ActionOptions (PLMD) |
FunctionTemplateBase (PLMD::function) |
Pbc (PLMD) |
| ActionPilot (PLMD) |
Funnel (PLMD::funnel) |
PbcAction (PLMD) |
| ActionRegister (PLMD) |
FUNNEL_PS (PLMD::funnel) |
PBMetaD (PLMD::bias) |
| ActionRegisterPointers (PLMD) |
fusionPoreExpansionP (PLMD::membranefusion) |
PCA (PLMD::dimred) |
| ActionRegistration (PLMD) |
fusionPoreNucleationP (PLMD::membranefusion) |
PCARMSD (PLMD::colvar) |
| ActionSet (PLMD) |
|
PCAVars (PLMD::mapping) |
| ActionSetup (PLMD) |
PDB (PLMD) |
| ActionShortcut (PLMD) |
GatherReplicas (PLMD::generic) |
PDB2Constant (PLMD::generic) |
| ActionToGetData (PLMD) |
MetaD::Gaussian (PLMD::bias) |
PdbRenumber (PLMD::cltools) |
| ActionToPutData (PLMD) |
PBMetaD::Gaussian (PLMD::bias) |
PesMD (PLMD::cltools) |
| ActionVolume (PLMD::volumes) |
gaussianSwitch (PLMD::switchContainers) |
Piecewise (PLMD::function) |
| ActionWithArguments (PLMD) |
GenericMolInfo (PLMD) |
PiecewiseShortcut (PLMD::function) |
| ActionWithGrid (PLMD::gridtools) |
GenExample (PLMD::cltools) |
PIV (PLMD::piv) |
| ActionWithMatrix (PLMD) |
GenJson (PLMD::cltools) |
PlaceholderFunction (PLMD::lepton) |
| ActionWithValue (PLMD) |
GenTemplate (PLMD::cltools) |
Plane (PLMD::colvar) |
| ActionWithVector (PLMD) |
GeometricPath (PLMD::mapping) |
PlaneMulti (PLMD::colvar) |
| ActionWithVirtualAtom (PLMD) |
GeometricPathShortcut (PLMD::mapping) |
PlaneShortcut (PLMD::multicolvar) |
| AdaptivePath (PLMD::mapping) |
GHBFIX (PLMD::colvar) |
PlaneShortcut (PLMD::colvar) |
| Plumed::add_buffer_to (PLMD) |
Ghost (PLMD::vatom) |
Plumed (PLMD::generic) |
| AdjacencyMatrixBase (PLMD::adjmat) |
Gradient (PLMD::gridtools) |
plumed |
| small_vector_base::allocations_are_movable (PLMD::gch::detail) |
GREX (PLMD) |
Plumed (PLMD) |
| small_vector_base::allocations_are_swappable (PLMD::gch::detail) |
Grid (PLMD) |
plumed_error |
| allocator_inliner (PLMD::gch::detail) |
GridBase (PLMD) |
plumed_error_filesystem_path |
| allocator_inliner< Allocator, false > (PLMD::gch::detail) |
GridCoordinatesObject (PLMD::gridtools) |
PlumedMain::plumed_error_handler (PLMD) |
| allocator_inliner< Allocator, true > (PLMD::gch::detail) |
GridCustom (PLMD::gridtools) |
plumed_function_holder |
| allocator_interface (PLMD::gch::detail) |
GridIntegrationWeights (PLMD::ves) |
plumed_nothrow_handler |
| AlphaBeta (PLMD::multicolvar) |
GridLinearInterpolation (PLMD::ves) |
plumed_nothrow_handler_x |
| AlphaRMSD (PLMD::secondarystructure) |
GridSearch (PLMD::gridtools) |
plumed_plumedmain_function_holder_x |
| Angle (PLMD::colvar) |
GridSum (PLMD::gridtools) |
plumed_safeptr |
| Angle (PLMD) |
Group (PLMD) |
plumed_safeptr_x |
| AngleMulti (PLMD::colvar) |
GrowableNeighborList (PLMD::metatensor::vesin::cpu) |
plumed_symbol_table_type_x |
| Angles (PLMD::multicolvar) |
Gyration (PLMD::colvar) |
PlumedHandle (PLMD) |
| AngleShortcut (PLMD::colvar) |
GyrationShortcut (PLMD::colvar) |
PlumedMain (PLMD) |
| AngularTetra (PLMD::symfunc) |
|
CellList::Point (PLMD::metatensor::vesin::cpu) |
| ANN (PLMD::function::annfunc) |
Position (PLMD::colvar) |
| annfunc::ANN (PLMD) |
Stopwatch::Handler (PLMD) |
position_linear_proj (PLMD::sizeshape) |
| AntibetaRMSD (PLMD::secondarystructure) |
Subprocess::Handler (PLMD) |
position_maha_dist (PLMD::sizeshape) |
| ArgsToVatom (PLMD::vatom) |
Tools::CriticalSectionWithKey::Handler (PLMD) |
PositionMulti (PLMD::colvar) |
| ArrangePoints (PLMD::dimred) |
allocator_interface::has_alloc_construct (PLMD::gch::detail) |
PositionShortcut (PLMD::colvar) |
| AsmJitRuntimePtr (PLMD::lepton) |
allocator_interface::has_alloc_construct_check (PLMD::gch::detail) |
PRE (PLMD::isdb) |
| Exception::Assertion (PLMD) |
allocator_interface::has_alloc_construct_check< void_t< decltype(std::declval< A & >().construct(std::declval< V * >(), std::declval< Args >()...))>, A, V, Args... > (PLMD::gch::detail) |
Print (PLMD::generic) |
| AtomicSMAC (PLMD::symfunc) |
allocator_interface::has_alloc_construct_impl (PLMD::gch::detail) |
PrintNDX (PLMD::generic) |
| AtomNumber (PLMD) |
allocator_interface::has_alloc_construct_impl< typename std::enable_if< is_complete< V >::value >::type, A, V, Args... > (PLMD::gch::detail) |
ProbWeight (PLMD) |
| Average (PLMD::generic) |
allocator_interface::has_alloc_destroy (PLMD::gch::detail) |
Product (PLMD::function) |
|
|
allocator_interface::has_alloc_destroy< A, V, typename std::enable_if< is_complete< V >::value >::type > (PLMD::gch::detail) |
ProjectionOnAxis (PLMD::colvar) |
| allocator_interface::has_alloc_destroy_impl (PLMD::gch::detail) |
ProjectPoints (PLMD::dimred) |
| baseSwitch (PLMD::switchContainers) |
allocator_interface::has_alloc_destroy_impl< void_t< decltype(std::declval< A & >().destroy(std::declval< V * >()))>, A, V > (PLMD::gch::detail) |
PropertyMap (PLMD::colvar) |
| BasisFunctions (PLMD::ves) |
allocator_interface::has_ptr_traits_to_address (PLMD::gch::detail) |
Puckering (PLMD::colvar) |
| Bessel (PLMD::function) |
allocator_interface::has_ptr_traits_to_address< P, void_t< decltype(std::pointer_traits< P >::to_address(std::declval< P >()))> > (PLMD::gch::detail) |
pytorch::PytorchModel (PLMD) |
| BesselShortcut (PLMD::function) |
has_size_and_data (PLMD::mergeVectorTools) |
|
| Between (PLMD::function) |
has_size_and_data (PLMD::wrapper) |
| BetweenShortcut (PLMD::function) |
has_size_and_data< T, std::void_t< decltype(std::declval< T >().size()), decltype(std::declval< T >().data())> > (PLMD::mergeVectorTools) |
Quaternion (PLMD::crystdistrib) |
| BF_Chebyshev (PLMD::ves) |
has_size_and_data< T, void_t< decltype(std::declval< T >().size()), decltype(std::declval< T >().data())> > (PLMD::wrapper) |
QuaternionBondProductMatrix (PLMD::crystdistrib) |
| BF_Combined (PLMD::ves) |
HbondMatrix (PLMD::adjmat) |
QuaternionMulti (PLMD::crystdistrib) |
| BF_Cosine (PLMD::ves) |
HBPammMatrix (PLMD::pamm) |
QuaternionProductMatrix (PLMD::crystdistrib) |
| BF_CubicBsplines (PLMD::ves) |
HBPammShortcut (PLMD::pamm) |
QuaternionShortcut (PLMD::crystdistrib) |
| BF_Custom (PLMD::ves) |
HexacticParameter (PLMD::symfunc) |
|
| BF_Fourier (PLMD::ves) |
Highest (PLMD::function) |
| BF_Gaussians (PLMD::ves) |
HighestShortcut (PLMD::function) |
RadialTetra (PLMD::symfunc) |
| BF_Legendre (PLMD::ves) |
Histogram (PLMD::gridtools) |
Random (PLMD) |
| BF_Powers (PLMD::ves) |
HistogramBead (PLMD) |
Random_Acceleration_MD (PLMD::maze) |
| BF_Sine (PLMD::ves) |
|
Random_Walk (PLMD::maze) |
| BF_Wavelets (PLMD::ves) |
RandomExchanges (PLMD::generic) |
| Bias (PLMD::bias) |
RegisterBase::ID (PLMD) |
rational (PLMD::switchContainers) |
| BiasRepresentation (PLMD) |
IFile (PLMD) |
RDC (PLMD::isdb) |
| BiasValue (PLMD::bias) |
PathMSDBase::ImagePath (PLMD::colvar) |
RDF (PLMD::gridtools) |
| BiasWeight (PLMD) |
PathMSDBase::imgOrderByDist (PLMD::colvar) |
Read (PLMD::generic) |
| BopsShortcut (PLMD::crystdistrib) |
PathMSDBase::imgOrderBySimilarity (PLMD::colvar) |
ReadGridInSetup (PLMD::gridtools) |
| BoundingBox (PLMD::metatensor::vesin) |
Include (PLMD::generic) |
Register (PLMD) |
| Brent1DRootSearch (PLMD) |
Info (PLMD::cltools) |
RegisterBase (PLMD) |
| Bridge (PLMD::adjmat) |
inline_storage (PLMD::gch::detail) |
Register::RegistrationLock (PLMD) |
| BridgeMatrix (PLMD::adjmat) |
inline_storage< T, 0 > (PLMD::gch::detail) |
small_vector_base::relocate_with_move (PLMD::gch::detail) |
| small_vector_base::bypass_tag (PLMD::gch::detail) |
InPlaneDistances (PLMD::multicolvar) |
Communicator::Request (PLMD) |
|
|
InterpolateGrid (PLMD::gridtools) |
Rescale (PLMD::isdb) |
| Interpolator (PLMD::gridtools) |
ResetCell (PLMD::generic) |
| Caliber (PLMD::isdb) |
Plumed::Invalid (PLMD) |
Restart (PLMD::setup) |
| Cell (PLMD::colvar) |
InvertMatrix (PLMD::matrixtools) |
Restraint (PLMD::bias) |
| CellList::Cell (PLMD::metatensor::vesin::cpu) |
allocator_interface::is_complete (PLMD::gch::detail) |
RestraintShortcut (PLMD::bias) |
| CellList (PLMD::metatensor::vesin::cpu) |
default_buffer_size::is_complete (PLMD::gch) |
Plumed::rethrow_nested (PLMD) |
| CellShift (PLMD::metatensor::vesin) |
default_buffer_size::is_complete< U, decltype(static_cast< void >(sizeof(U)))> (PLMD::gch) |
Plumed::rethrow_not_nested (PLMD) |
| Center (PLMD::vatom) |
allocator_interface::is_complete< U, decltype(static_cast< void >(sizeof(U)))> (PLMD::gch::detail) |
ReweightBase (PLMD::bias) |
| CenterShortcut (PLMD::vatom) |
allocator_interface::is_contiguous_iterator (PLMD::gch::detail) |
ReweightBias (PLMD::bias) |
| CheckInRange (PLMD) |
allocator_interface::is_convertible_pointer (PLMD::gch::detail) |
ReweightMetad (PLMD::bias) |
| CS2Backbone::ChemicalShift (PLMD::isdb) |
is_custom_array (PLMD::wrapper) |
ReweightTemperaturePressure (PLMD::bias) |
| Citations (PLMD) |
is_custom_array< std::array< T, N > > (PLMD::wrapper) |
CS2Backbone::RingInfo (PLMD::isdb) |
| ClassicalMultiDimensionalScaling (PLMD::dimred) |
is_custom_array< T[N]> (PLMD::wrapper) |
RMSD (PLMD::colvar) |
| CLTool (PLMD) |
small_vector_base::is_emplace_constructible (PLMD::gch::detail) |
RMSD (PLMD) |
| CLToolMain (PLMD) |
small_vector_base::is_emplace_constructible_impl (PLMD::gch::detail) |
RMSDCoreData (PLMD) |
| CLToolOptions (PLMD) |
small_vector_base::is_emplace_constructible_impl< void_t< typename std::enable_if< is_complete< V >::value >::type, decltype(std::declval< AI & >().construct(std::declval< V * >(), std::declval< Args >()...))>, AI, V, Args... > (PLMD::gch::detail) |
RMSDShortcut (PLMD::colvar) |
| CLToolRegister (PLMD) |
small_vector_base::is_eraseable (PLMD::gch::detail) |
RMSDVector (PLMD::colvar) |
| CLToolRegisterPointers (PLMD) |
small_vector_base::is_eraseable< AI, void_t< decltype(std::declval< AI & >().destroy(std::declval< value_ty * >()))> > (PLMD::gch::detail) |
rnd (PLMD::maze) |
| CLToolSumHills (PLMD::cltools) |
small_vector_base::is_explicitly_copy_insertable (PLMD::gch::detail) |
RootFindingBase (PLMD) |
| ClusterDiameter (PLMD::clusters) |
small_vector_base::is_explicitly_move_insertable (PLMD::gch::detail) |
RopsShortcut (PLMD::crystdistrib) |
| ClusterDistribution (PLMD::clusters) |
small_vector_base::is_explicitly_nothrow_copy_insertable (PLMD::gch::detail) |
MatrixSquareBracketsAccess::Row (PLMD) |
| ClusterDistributionShortcut (PLMD::clusters) |
small_vector_base::is_explicitly_nothrow_move_insertable (PLMD::gch::detail) |
|
| ClusteringBase (PLMD::clusters) |
allocator_interface::is_memcpyable (PLMD::gch::detail) |
| ClusterNatoms (PLMD::clusters) |
allocator_interface::is_memcpyable< QualifiedFrom, QualifiedTo, typename std::enable_if< is_complete< QualifiedFrom >::value >::type > (PLMD::gch::detail) |
S2ContactModel (PLMD::s2cm) |
| ClusterProperties (PLMD::clusters) |
allocator_interface::is_memcpyable_integral (PLMD::gch::detail) |
Plumed::SafePtr (PLMD) |
| ClusterWeights (PLMD::clusters) |
allocator_interface::is_memcpyable_integral< From, To, typename std::enable_if< is_complete< From >::value >::type > (PLMD::gch::detail) |
SASA_HASEL (PLMD::sasa) |
| ClusterWithSurface (PLMD::clusters) |
allocator_interface::is_memcpyable_iterator (PLMD::gch::detail) |
SASA_LCPO (PLMD::sasa) |
| CoeffsBase (PLMD::ves) |
allocator_interface::is_memcpyable_iterator< std::move_iterator< InputIt > > (PLMD::gch::detail) |
SAXS (PLMD::isdb) |
| CoeffsMatrix (PLMD::ves) |
small_vector_base::is_nothrow_emplace_constructible (PLMD::gch::detail) |
ScalarBessel (PLMD::function) |
| CoeffsVector (PLMD::ves) |
is_nothrow_swappable (PLMD::gch::detail::small_vector_adl) |
ScalarCombine (PLMD::function) |
| Collect (PLMD::generic) |
is_nothrow_swappable< T, decltype(swap(std::declval< T & >(), std::declval< T & >()))> (PLMD::gch::detail::small_vector_adl) |
ScalarCustom (PLMD::function) |
| CollectFrames (PLMD::landmarks) |
allocator_interface::is_small_vector_iterator (PLMD::gch::detail) |
ScalarDifference (PLMD::refdist) |
| Colvar (PLMD) |
allocator_interface::is_small_vector_iterator< small_vector_iterator< Ts... > > (PLMD::gch::detail) |
ScalarEvalGrid (PLMD::gridtools) |
| ColvarFake (PLMD::colvar) |
allocator_interface::is_trivially_constructible (PLMD::gch::detail) |
ScalarHighest (PLMD::function) |
| ColvarShortcut (PLMD::colvar) |
allocator_interface::is_trivially_constructible_impl (PLMD::gch::detail) |
ScalarMoments (PLMD::function) |
| Combine (PLMD::function) |
allocator_interface::is_trivially_constructible_impl< typename std::enable_if< is_complete< V >::value >::type, V, Args... > (PLMD::gch::detail) |
ScalarPiecewise (PLMD::function) |
| CombineShortcut (PLMD::function) |
allocator_interface::is_trivially_destructible (PLMD::gch::detail) |
ScalarSort (PLMD::function) |
| Committor (PLMD::generic) |
allocator_interface::is_trivially_destructible< V, typename std::enable_if< is_complete< V >::value >::type > (PLMD::gch::detail) |
ScalarSum (PLMD::function) |
| Communicator (PLMD) |
allocator_interface::is_uninitialized_memcpyable (PLMD::gch::detail) |
SecondaryStructureRMSD (PLMD::secondarystructure) |
| CompiledExpression (PLMD::lepton) |
allocator_interface::is_uninitialized_memcpyable< To, From > (PLMD::gch::detail) |
Select (PLMD::isdb) |
| Completion (PLMD::cltools) |
allocator_interface::is_uninitialized_memcpyable_impl (PLMD::gch::detail) |
SelectComponents (PLMD::valtools) |
| Concatenate (PLMD::valtools) |
allocator_interface::is_uninitialized_memcpyable_iterator (PLMD::gch::detail) |
SelectMassCharge (PLMD::colvar) |
| ConjugateGradient (PLMD) |
allocator_interface::is_uninitialized_memcpyable_iterator< std::move_iterator< U >, V > (PLMD::gch::detail) |
Selector (PLMD::isdb) |
| MatrixSquareBracketsAccess::Const_row (PLMD) |
|
SelectWithMask (PLMD::valtools) |
| Constant (PLMD::generic) |
Shadow (PLMD::isdb) |
| Communicator::ConstData (PLMD) |
JCoupling (PLMD::isdb) |
PIV::SharedData (PLMD::piv) |
| ContactMap (PLMD::colvar) |
|
ShowGraph (PLMD::cltools) |
| ContactMatrix (PLMD::adjmat) |
SimpleMD (PLMD::cltools) |
| ContactMatrixShortcut (PLMD::adjmat) |
KDE (PLMD::gridtools) |
Simulated_Annealing (PLMD::maze) |
| RegisterBase::ContentAndFullPath (PLMD) |
OPESmetad::kernel (PLMD::opes) |
Plumed::SizeLike (PLMD) |
| ContourFindingBase (PLMD::contour) |
Kernel (PLMD::refdist) |
WithCmd::SizeLike (PLMD) |
| convergence (PLMD::opes) |
KernelFunctions (PLMD) |
TypesafePtr::SizeLike (PLMD) |
| ConvertToFES (PLMD::gridtools) |
Keywords::KeyType (PLMD) |
SketchMap (PLMD::dimred) |
| CoordAngles (PLMD::multicolvar) |
Keywords (PLMD) |
SketchMapProjection (PLMD::dimred) |
| Coordination (PLMD::colvar) |
KLEntropy (PLMD::gridtools) |
SMAC (PLMD::symfunc) |
| CoordinationBase (PLMD::colvar) |
kt (PLMD::cltools) |
SMACOF (PLMD::dimred) |
| CoordinationNumbers (PLMD::symfunc) |
|
small_vector (PLMD::gch) |
| CoordShellVectorFunction (PLMD::symfunc) |
small_vector_base (PLMD::gch::detail) |
| cosinusSwitch (PLMD::switchContainers) |
LandmarkSelection (PLMD::landmarks) |
small_vector_data (PLMD::gch::detail) |
| CovarianceMatrix (PLMD::matrixtools) |
LatticeReduction (PLMD) |
small_vector_data< Pointer, SizeT, T, 0 > (PLMD::gch::detail) |
| CreateMask (PLMD::generic) |
LeptonCall (PLMD) |
small_vector_data_base (PLMD::gch::detail) |
| Tools::CriticalSectionWithKey (PLMD) |
Plumed::LeptonException (PLMD) |
small_vector_iterator (PLMD::gch) |
| CS2Backbone (PLMD::isdb) |
leptonSwitch (PLMD::switchContainers) |
smapSwitch (PLMD::switchContainers) |
| CS2BackboneDB (PLMD::isdb) |
LessThan (PLMD::function) |
Sort (PLMD::function) |
| Plumed::CString (PLMD) |
LessThanShortcut (PLMD::function) |
SortShortcut (PLMD::function) |
| cubicSwitch (PLMD::switchContainers) |
LinearBasisSetExpansion (PLMD::ves) |
SparseGrid (PLMD) |
| Custom (PLMD::function) |
LinkCells (PLMD) |
SpHarmShortcut (PLMD::symfunc) |
| CustomFunction (PLMD::lepton) |
Load (PLMD::setup) |
SphericalHarmonic (PLMD::symfunc) |
| CustomShortcut (PLMD::function) |
LocalAverage (PLMD::symfunc) |
SAXS::SplineCoeffs (PLMD::isdb) |
| CyHarmShortcut (PLMD::symfunc) |
LocalCrystallinity (PLMD::symfunc) |
Sprint (PLMD::sprint) |
| CylindricalHarmonic (PLMD::symfunc) |
LocalEnsemble (PLMD::function) |
small_vector_base::stack_temporary (PLMD::gch::detail) |
|
|
LocalSteinhardt (PLMD::symfunc) |
Stats (PLMD::function) |
| Exception::Location (PLMD) |
Communicator::Status (PLMD) |
| Communicator::Data (PLMD) |
Log (PLMD) |
Steered_MD (PLMD::maze) |
| DataPassingObject (PLMD) |
LogMFD (PLMD::logmfd) |
Steinhardt (PLMD::symfunc) |
| DataPassingObjectTyped (PLMD) |
LogSumExp (PLMD::landmarks) |
Stopwatch (PLMD) |
| DataPassingTools (PLMD) |
LoopUnroller (PLMD) |
small_vector_base::strong_exception_policy (PLMD::gch::detail) |
| DataPassingToolsTyped (PLMD) |
Loss (PLMD::maze) |
Subprocess (PLMD) |
| Debug (PLMD::generic) |
LWalls (PLMD::bias) |
SubprocessPid (PLMD) |
| default_buffer_size (PLMD::gch) |
|
Sum (PLMD::function) |
| tls::delete_ptr (PLMD::maze) |
SumShortcut (PLMD::function) |
| Density (PLMD::volumes) |
MahalanobisDistance (PLMD::refdist) |
SwitchingFunction (PLMD) |
| PlumedMain::DeprecatedAtoms (PLMD) |
make_void (PLMD::wrapper) |
SwitchingPlotter (PLMD::cltools) |
| Determinant (PLMD::matrixtools) |
Manual (PLMD::cltools) |
|
| DFSClustering (PLMD::clusters) |
MarginalWeight (PLMD::ves) |
| DHEnergy (PLMD::colvar) |
MassChargeInput (PLMD::generic) |
t_trnheader (PLMD::xdrfile) |
| DiagonalizeMatrix (PLMD::matrixtools) |
Matrix (PLMD::metatensor::vesin) |
tanhSwitch (PLMD::switchContainers) |
| Difference (PLMD::refdist) |
Matrix (PLMD) |
TargetDist (PLMD) |
| DifferenceShortcut (PLMD::refdist) |
MatrixBetween (PLMD::function) |
TargetDistModifer (PLMD::ves) |
| Dihcor (PLMD::multicolvar) |
MatrixCombine (PLMD::function) |
TargetDistribution (PLMD::ves) |
| DihedralCorrelation (PLMD::colvar) |
MatrixCustom (PLMD::function) |
TD_Chi (PLMD::ves) |
| DihedralCorrelationMulti (PLMD::colvar) |
MatrixCyHarm (PLMD::symfunc) |
TD_ChiSquared (PLMD::ves) |
| DihedralCorrelationShortcut (PLMD::colvar) |
MatrixFccubic (PLMD::symfunc) |
TD_Custom (PLMD::ves) |
| Dimer (PLMD::colvar) |
MatrixLessThan (PLMD::function) |
TD_Exponential (PLMD::ves) |
| Dipole (PLMD::colvar) |
MatrixMoreThan (PLMD::function) |
TD_ExponentiallyModifiedGaussian (PLMD::ves) |
| DipoleMulti (PLMD::colvar) |
MatrixOperationBase (PLMD::matrixtools) |
TD_Gaussian (PLMD::ves) |
| DipoleShortcut (PLMD::colvar) |
MatrixProductDiagonal (PLMD::refdist) |
TD_GeneralizedExtremeValue (PLMD::ves) |
| Tools::DirectoryChanger (PLMD) |
MatrixSpHarm (PLMD::symfunc) |
TD_GeneralizedNormal (PLMD::ves) |
| Displacement (PLMD::refdist) |
MatrixSquareBracketsAccess (PLMD) |
TD_Grid (PLMD::ves) |
| Distance (PLMD::colvar) |
MatrixSum (PLMD::function) |
TD_LinearCombination (PLMD::ves) |
| DistanceFromContour (PLMD::contour) |
MatrixTimesMatrix (PLMD::matrixtools) |
TD_Multicanonical (PLMD::ves) |
| DistanceFromContourBase (PLMD::contour) |
MatrixTimesVector (PLMD::matrixtools) |
TD_MultithermalMultibaric (PLMD::ves) |
| DistanceFromSphericalContour (PLMD::contour) |
MaxEnt (PLMD::bias) |
TD_ProductCombination (PLMD::ves) |
| DistanceMatrix (PLMD::adjmat) |
md_atom (PLMD::molfile) |
TD_ProductDistribution (PLMD::ves) |
| DistanceMulti (PLMD::colvar) |
md_box (PLMD::molfile) |
TD_Uniform (PLMD::ves) |
| Distances (PLMD::multicolvar) |
md_file (PLMD::molfile) |
TD_VonMises (PLMD::ves) |
| DistanceShortcut (PLMD::colvar) |
md_header (PLMD::molfile) |
TD_WellTempered (PLMD::ves) |
| DLLoader (PLMD) |
MD_LinearExpansionPES (PLMD::ves) |
MetaD::TemperingSpecs (PLMD::bias) |
| DomainDecomposition::DomainComms (PLMD) |
md_ts (PLMD::molfile) |
Template (PLMD::colvar) |
| DomainDecomposition (PLMD) |
mdMemoryView (PLMD) |
TensorGeneric (PLMD) |
| ::DomainDecomposition (PLMD) |
Member (PLMD::maze) |
TensorGenericAux (PLMD) |
| DopsShortcut (PLMD::crystdistrib) |
Memetic (PLMD::maze) |
ThreeBodyGFunctions (PLMD::symfunc) |
| Driver (PLMD::cltools) |
memFusionP (PLMD::membranefusion) |
Exception::Throw (PLMD) |
| DRMSD (PLMD::colvar) |
MemoryView (PLMD) |
Time (PLMD::generic) |
| DumpAtoms (PLMD::generic) |
MetaD (PLMD::bias) |
tls (PLMD::maze) |
| DumpContour (PLMD::contour) |
Metainference (PLMD::isdb) |
Tools (PLMD) |
| DumpDerivatives (PLMD::generic) |
MetainferenceBase (PLMD::isdb) |
TopologyMatrix (PLMD::adjmat) |
| DumpForces (PLMD::generic) |
MetatensorPlumedAction (PLMD::metatensor) |
Torsion (PLMD::colvar) |
| DumpGrid (PLMD::gridtools) |
MFilterLess (PLMD::multicolvar) |
Torsion (PLMD) |
| DumpMassCharge (PLMD::generic) |
MFilterMore (PLMD::multicolvar) |
TorsionMulti (PLMD::colvar) |
| DumpMultiColvar (PLMD::multicolvar) |
Minimise1DBrent (PLMD) |
Torsions (PLMD::multicolvar) |
| DumpPDB (PLMD::generic) |
MinimiseBase (PLMD) |
TorsionShortcut (PLMD::colvar) |
| DumpProjections (PLMD::generic) |
MolDataClass (PLMD) |
TorsionsMatrix (PLMD::adjmat) |
| DumpVector (PLMD::generic) |
molfile_atom_t (PLMD::molfile) |
TransposeMatrix (PLMD::matrixtools) |
| DynamicReferenceRestraining (PLMD::drr) |
molfile_graphics_t (PLMD::molfile) |
Tree (PLMD) |
|
|
molfile_metadata_t (PLMD::molfile) |
trx_hdr (PLMD::molfile) |
| molfile_plugin_t (PLMD::molfile) |
TypesafePtr (PLMD) |
| ECVcustom (PLMD::opes) |
molfile_qm_basis_t (PLMD::molfile) |
|
| ECVlinear (PLMD::opes) |
molfile_qm_hessian_t (PLMD::molfile) |
| ECVmultiThermal (PLMD::opes) |
molfile_qm_metadata_t (PLMD::molfile) |
UIestimator (PLMD::drr::UIestimator) |
| ECVmultiThermalBaric (PLMD::opes) |
molfile_qm_sysinfo_t (PLMD::molfile) |
allocator_interface::underlying_if_enum (PLMD::gch::detail) |
| ECVumbrellasFile (PLMD::opes) |
molfile_qm_t (PLMD::molfile) |
allocator_interface::underlying_if_enum< T, typename std::enable_if< std::is_enum< T >::value >::type > (PLMD::gch::detail) |
| ECVumbrellasLine (PLMD::opes) |
molfile_qm_timestep_metadata (PLMD::molfile) |
Units (PLMD::setup) |
| EDS (PLMD::eds) |
molfile_qm_timestep_t (PLMD::molfile) |
Units (PLMD) |
| EEFSolv (PLMD::colvar) |
molfile_qm_wavefunction_t (PLMD::molfile) |
UpdateIf (PLMD::generic) |
| EffectiveEnergyDrift (PLMD::generic) |
molfile_timestep_metadata (PLMD::molfile) |
UWalls (PLMD::multicolvar) |
| EMMI (PLMD::isdb) |
molfile_timestep_t (PLMD::molfile) |
UWalls (PLMD::bias) |
| EMMIVOX (PLMD::isdb) |
molfile_volumetric_readwrite_t (PLMD::molfile) |
|
| EndPlumed (PLMD::generic) |
molfile_volumetric_t (PLMD::molfile) |
| Energy (PLMD::colvar) |
MolInfo (PLMD::generic) |
Value (PLMD) |
| Ensemble (PLMD::function) |
Moments (PLMD::function) |
Vector (PLMD::metatensor::vesin) |
| DLLoader::EnsureGlobalDLOpen (PLMD) |
MomentsShortcut (PLMD::function) |
VectorBessel (PLMD::function) |
| EnvironmentSimilarity (PLMD::envsim) |
MoreThan (PLMD::function) |
VectorBetween (PLMD::function) |
| ERMSD (PLMD::colvar) |
MoreThanShortcut (PLMD::function) |
VectorCombine (PLMD::function) |
| ERMSD (PLMD) |
MovingRestraint (PLMD::bias) |
VectorCustom (PLMD::function) |
| EuclideanDistance (PLMD::refdist) |
MPI_Comm (PLMD) |
VectorDifference (PLMD::refdist) |
| EvaluateFunctionOnGrid (PLMD::gridtools) |
MPI_Datatype (PLMD) |
VectorEvalGrid (PLMD::gridtools) |
| EvaluateGridFunction (PLMD::gridtools) |
MPI_Request (PLMD) |
VectorGeneric (PLMD) |
| Exception (PLMD) |
MPI_Status (PLMD) |
VectorHighest (PLMD::function) |
| Plumed::Exception (PLMD) |
MQMulti (PLMD::colvar) |
VectorLessThan (PLMD::function) |
| Exception (PLMD::lepton) |
MQShortcut (PLMD::colvar) |
VectorMoments (PLMD::function) |
| ExceptionDebug (PLMD) |
MultiColvarDensity (PLMD::gridtools) |
VectorMoreThan (PLMD::function) |
| Plumed::ExceptionDebug (PLMD) |
MultiColvarShortcuts (PLMD::multicolvar) |
VectorSort (PLMD::function) |
| ExceptionError (PLMD) |
MultiColvarTemplate (PLMD::colvar) |
VectorSum (PLMD::function) |
| Plumed::ExceptionError (PLMD) |
MultiRMSD (PLMD::colvar) |
VesBias (PLMD::ves) |
| ExceptionRegisterError (PLMD) |
MultiValue (PLMD) |
VesDeltaF (PLMD::ves) |
| ExceptionTypeError (PLMD) |
allocator_interface::must_use_alloc_construct (PLMD::gch::detail) |
VesinNeighborList (PLMD::metatensor::vesin) |
| Plumed::ExceptionTypeError (PLMD) |
allocator_interface::must_use_alloc_destroy (PLMD::gch::detail) |
VesinOptions (PLMD::metatensor::vesin) |
| ExchangePatterns (PLMD) |
|
VesLinearExpansion (PLMD::ves) |
| ExpansionCVs (PLMD::opes) |
VesTools (PLMD::ves) |
| exploration (PLMD::opes) |
n_matrix (PLMD::drr::UIestimator) |
vmdplugin_t (PLMD::molfile) |
| exponentialSwitch (PLMD::switchContainers) |
n_vector (PLMD::drr::UIestimator) |
Volume (PLMD::colvar) |
| ExpressionProgram (PLMD::lepton) |
nativeqSwitch (PLMD::switchContainers) |
VolumeAround (PLMD::volumes) |
| ExpressionTreeNode (PLMD::lepton) |
NeighborList (PLMD) |
VolumeAroundShortcut (PLMD::volumes) |
| ExtendedLagrangian (PLMD::bias) |
Neighbors (PLMD::adjmat) |
VolumeCavity (PLMD::volumes) |
| External (PLMD::bias) |
NOE (PLMD::isdb) |
VolumeCavityShortcut (PLMD::volumes) |
| ExtraCV (PLMD::colvar) |
NormalizedEuclideanDistance (PLMD::refdist) |
VolumeInCylinder (PLMD::volumes) |
|
|
|
VolumeInCylinderShortcut (PLMD::volumes) |
| VolumeInEnvelope (PLMD::volumes) |
| F1dim (PLMD) |
OFile (PLMD) |
VolumeInEnvelopeShortcut (PLMD::volumes) |
| FarthestPointSampling (PLMD::landmarks) |
Ones (PLMD::generic) |
VolumeInSphere (PLMD::volumes) |
| fastGaussianSwitch (PLMD::switchContainers) |
OpenMPVars (PLMD::OpenMP) |
VolumeInSphereShortcut (PLMD::volumes) |
| Tools::FastStringUnorderedMap (PLMD) |
Operation (PLMD::lepton) |
VolumeShortcut (PLMD::volumes) |
| Fccubic (PLMD::symfunc) |
OPESexpanded (PLMD::opes) |
VolumeTetrapore (PLMD::volumes) |
| FccubicShortcut (PLMD::symfunc) |
OPESmetad (PLMD::opes) |
VolumeTetraporeShortcut (PLMD::volumes) |
| FermiSwitchingFunction (PLMD::ves) |
OPESmetad_c (PLMD::opes) |
Voronoi (PLMD::matrixtools) |
| FesWeight (PLMD::ves) |
OPESmetad_e (PLMD::opes) |
VStack (PLMD::valtools) |
| IFile::Field (PLMD) |
Opt_Adam (PLMD::ves) |
|
| OFile::Field (PLMD) |
Opt_BachAveragedSGD (PLMD::ves) |
| FileBase::FieldBase (PLMD) |
Opt_Dummy (PLMD::ves) |
Walls (PLMD::bias) |
| FileBase (PLMD) |
Opt_RobbinsMonroSGD (PLMD::ves) |
Stopwatch::Watch (PLMD) |
| FilesHandler (PLMD::function) |
Optimizer (PLMD::maze) |
WaveletGrid (PLMD::ves) |
| Plumed::finalize_plumed_error (PLMD) |
Optimizer (PLMD::ves) |
WeightBase (PLMD) |
| FindContour (PLMD::contour) |
OptimizerBias (PLMD::maze) |
WellTemperedModifer (PLMD::ves) |
| FindContourSurface (PLMD::contour) |
FuncPathMSD::ordering (PLMD::function) |
Wham (PLMD::wham) |
| FindGridOptimum (PLMD::gridtools) |
OuterProduct (PLMD::matrixtools) |
WhamHistogram (PLMD::wham) |
| FindSphericalContour (PLMD::contour) |
OutputBasisFunctions (PLMD::ves) |
WhamWeights (PLMD::wham) |
| fio_iovec (PLMD::molfile) |
OutputCluster (PLMD::clusters) |
WholeMolecules (PLMD::generic) |
| FISST (PLMD::fisst) |
OutputFesBias (PLMD::ves) |
WithCmd (PLMD) |
| FitToTemplate (PLMD::generic) |
OutputTargetDistribution (PLMD::ves) |
WrapAround (PLMD::generic) |
| FixedAtom (PLMD::vatom) |
|
|
| fixedRational (PLMD::switchContainers) |
| Flatten (PLMD::valtools) |
PairEntropies (PLMD::gridtools) |
XAngle (PLMD::multicolvar) |
| FlexibleBin (PLMD) |
PairEntropy (PLMD::gridtools) |
XDR (PLMD::xdrfile) |
| Flush (PLMD::generic) |
FuncPathGeneral::pairordering (PLMD::function) |
XDR::xdr_ops (PLMD::xdrfile) |
| ForwardDecl (PLMD) |
FuncPathMSD::pairordering (PLMD::function) |
XDRFILE (PLMD::xdrfile) |
| FourierTransform (PLMD::fourier) |
PAMM (PLMD::pamm) |
XYTorsions (PLMD::multicolvar) |
| | |
1.8.17