- u -
- U01()
: PLMD::Random
- U01d()
: PLMD::Random
- uboundDerivative()
: PLMD::HistogramBead
- UIestimator()
: PLMD::drr::UIestimator::UIestimator
- unchecked()
: PLMD::TypesafePtr
- unchecked_advance()
: PLMD::gch::detail::allocator_interface< Allocator >
- unchecked_allocate()
: PLMD::gch::detail::small_vector_base< Allocator, InlineCapacity >
- unchecked_calculate_new_capacity()
: PLMD::gch::detail::small_vector_base< Allocator, InlineCapacity >
- unchecked_next()
: PLMD::gch::detail::allocator_interface< Allocator >
- unchecked_prev()
: PLMD::gch::detail::allocator_interface< Allocator >
- uninitialized_copy()
: PLMD::gch::detail::allocator_interface< Allocator >
- uninitialized_fill()
: PLMD::gch::detail::allocator_interface< Allocator >
- uninitialized_move()
: PLMD::gch::detail::small_vector_base< Allocator, InlineCapacity >
- uninitialized_value_construct()
: PLMD::gch::detail::allocator_interface< Allocator >
- unique2raw()
: PLMD::Tools
- Units()
: PLMD::setup::Units
, PLMD::Units
- unlockRequests()
: PLMD::Action
, PLMD::ActionAtomistic
, PLMD::ActionWithArguments
, PLMD::ActionWithVector
, PLMD::contour::DistanceFromContourBase
, PLMD::generic::DumpAtoms
, PLMD::generic::PrintNDX
, PLMD::isdb::EMMI
, PLMD::isdb::MetainferenceBase
- unsetForcedNormalization()
: PLMD::ves::TargetDistribution
- update()
: PLMD::Action
, PLMD::bias::ExtendedLagrangian
, PLMD::bias::MaxEnt
, PLMD::bias::MetaD
, PLMD::bias::PBMetaD
, PLMD::contour::DumpContour
, PLMD::drr::UIestimator::UIestimator
, PLMD::eds::EDS
, PLMD::fisst::FISST
, PLMD::FlexibleBin
, PLMD::generic::Accumulate
, PLMD::generic::Collect
, PLMD::generic::DumpAtoms
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpForces
, PLMD::generic::DumpMassCharge
, PLMD::generic::DumpPDB
, PLMD::generic::DumpProjections
, PLMD::generic::DumpVector
, PLMD::generic::EffectiveEnergyDrift
, PLMD::generic::Flush
, PLMD::generic::Plumed
, PLMD::generic::Print
, PLMD::generic::PrintNDX
, PLMD::generic::Read
, PLMD::gridtools::DumpGrid
, PLMD::isdb::CS2Backbone
, PLMD::isdb::JCoupling
, PLMD::isdb::Metainference
, PLMD::isdb::NOE
, PLMD::isdb::PRE
, PLMD::isdb::RDC
, PLMD::isdb::SAXS
, PLMD::logmfd::LogMFD
, PLMD::mapping::PathDisplacements
, PLMD::mapping::PathReparameterization
, PLMD::NeighborList
, PLMD::opes::OPESexpanded
, PLMD::opes::OPESmetad< mode >
, PLMD::PlumedMain
, PLMD::ves::Optimizer
, PLMD::ves::OutputFesBias
, PLMD::ves::TargetDistribution
, PLMD::ves::VesDeltaF
, PLMD::ves::VesLinearExpansion
, PLMD::volumes::VolumeCavity
, PLMD::volumes::VolumeTetrapore
- update_alpha()
: PLMD::ves::VesDeltaF
- update_bias()
: PLMD::eds::EDS
, PLMD::fisst::FISST
- update_lambda()
: PLMD::bias::MaxEnt
- update_neighb()
: PLMD::colvar::EEFSolv
, PLMD::isdb::CS2Backbone
- update_neighbor_list()
: PLMD::isdb::EMMI
- update_nl()
: PLMD::maze::Optimizer
- update_output_filename()
: PLMD::drr::UIestimator::UIestimator
- update_pseudo_virial()
: PLMD::eds::EDS
- update_reference()
: PLMD::isdb::Shadow
- update_statistics()
: PLMD::eds::EDS
, PLMD::fisst::FISST
- update_tg_and_rct()
: PLMD::ves::VesDeltaF
- updateAdditionalIndices()
: PLMD::ActionWithVector
, PLMD::matrixtools::MatrixTimesVector
- updateAllNeighbourLists()
: PLMD::ActionWithMatrix
- updateBiasCutoffForTargetDistGrid()
: PLMD::ves::TargetDistribution
- updateBiasGrid()
: PLMD::ves::LinearBasisSetExpansion
- updateBiasWithoutCutoffGrid()
: PLMD::ves::LinearBasisSetExpansion
- updateComplete()
: PLMD::MultiValue
- updateDeltaF()
: PLMD::opes::OPESexpanded
- updateDepedentRMSDObjects()
: PLMD::mapping::PathProjectionCalculator
- updateFesGrid()
: PLMD::ves::LinearBasisSetExpansion
- updateFlagsPop()
: PLMD::PlumedMain
- updateFlagsPush()
: PLMD::PlumedMain
- updateFlagsTop()
: PLMD::PlumedMain
- updateForceTasksFromValue()
: PLMD::ActionWithVector
, PLMD::gridtools::KDE
- updateFrequencyAdaptiveStride()
: PLMD::bias::MetaD
- updateGradientAndHessian()
: PLMD::ves::VesBias
- updateGrid()
: PLMD::ves::TargetDistribution
, PLMD::ves::TD_Custom
, PLMD::ves::TD_LinearCombination
, PLMD::ves::TD_Multicanonical
, PLMD::ves::TD_MultithermalMultibaric
, PLMD::ves::TD_ProductCombination
, PLMD::ves::TD_ProductDistribution
, PLMD::ves::TD_WellTempered
- UpdateIf()
: PLMD::generic::UpdateIf
- updateIndex()
: PLMD::MultiValue
- updateLogTargetDistGrid()
: PLMD::ves::TargetDistribution
- updateNeighbourList()
: PLMD::ActionWithMatrix
, PLMD::adjmat::AdjacencyMatrixBase
- updateNlist()
: PLMD::bias::MetaD
, PLMD::opes::OPESmetad< mode >
- updateNVE()
: PLMD::logmfd::LogMFD
- updateNVT()
: PLMD::logmfd::LogMFD
- updateOutputComponents()
: PLMD::ves::Optimizer
- updateReweightFactor()
: PLMD::ves::VesBias
- updateTargetDist()
: PLMD::ves::TargetDistribution
- updateTargetDistribution()
: PLMD::ves::LinearBasisSetExpansion
- updateTargetDistributions()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- updateTaskListReductionStatus()
: PLMD::ActionWithVector
- updateTaskReductionFlag()
: PLMD::ActionWithVector
- updateUniqueLocal()
: PLMD::ActionAtomistic
- updateUnits()
: PLMD::ActionToPutData
- updateVS()
: PLMD::logmfd::LogMFD
- updateWork()
: PLMD::logmfd::LogMFD
- use()
: PLMD::Keywords
- useBiasCutoffKeywords()
: PLMD::ves::VesBias
- useCount()
: PLMD::Plumed
- useCountReferenceCounter()
: PLMD::PlumedMain
- useCustomisableComponents()
: PLMD::ActionWithValue
- useDynamicStepSizeKeywords()
: PLMD::ves::Optimizer
- useDynamicTargetDistributionKeywords()
: PLMD::ves::Optimizer
- useFixedStepSizeKeywords()
: PLMD::ves::Optimizer
- useGridBinKeywords()
: PLMD::ves::VesBias
- useGridLimitsKeywords()
: PLMD::ves::VesBias
- useHessian()
: PLMD::ves::Optimizer
- useHessianKeywords()
: PLMD::ves::Optimizer
- useInitialCoeffsKeywords()
: PLMD::ves::VesBias
- useMaskKeywords()
: PLMD::ves::Optimizer
- useMonitorAverageGradientKeywords()
: PLMD::ves::Optimizer
- useMultipleTargetDistributionKeywords()
: PLMD::ves::VesBias
- useMultipleWalkers()
: PLMD::ves::Optimizer
, PLMD::ves::VesBias
- useMultipleWalkersKeywords()
: PLMD::ves::Optimizer
- useNumericalDerivatives()
: PLMD::ActionWithValue
- useProjectionArgKeywords()
: PLMD::ves::VesBias
- useRestartKeywords()
: PLMD::ves::Optimizer
- useReweightFactorKeywords()
: PLMD::ves::Optimizer
, PLMD::ves::VesBias
- useTargetDistributionKeywords()
: PLMD::ves::VesBias
- usingNaturalUnits()
: PLMD::Action
, PLMD::PlumedMain::DeprecatedAtoms
, PLMD::PlumedMain
- UWalls()
: PLMD::bias::UWalls
, PLMD::multicolvar::UWalls