Here is a list of all class members with links to the classes they belong to:
- w -
- w0_
: PLMD::isdb::Rescale
- wait()
: PLMD::ActionForInterface
, PLMD::ActionToPutData
, PLMD::colvar::Energy
, PLMD::Communicator::Request
, PLMD::DomainDecomposition
, PLMD::PbcAction
- waitData()
: PLMD::PlumedMain
- walker_rank_
: PLMD::opes::OPESexpanded
, PLMD::opes::OPESmetad< mode >
- walkers_mpi_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- Walls()
: PLMD::bias::Walls
- warning()
: PLMD::Action
- wasscaled
: PLMD::ActionForInterface
- wasset
: PLMD::ActionForInterface
- watch
: PLMD::Stopwatch::Handler
- watches
: PLMD::Stopwatch
- WATERS
: PLMD::membranefusion::fusionPoreExpansionP
, PLMD::membranefusion::fusionPoreNucleationP
- wave
: PLMD::molfile::molfile_qm_timestep_t
- wave_coeffs
: PLMD::molfile::molfile_qm_wavefunction_t
- wavef_size
: PLMD::molfile::molfile_qm_metadata_t
, PLMD::molfile::molfile_qm_timestep_metadata
- waveletGrid_
: PLMD::ves::BF_Wavelets
- wavenumbers
: PLMD::molfile::molfile_qm_hessian_t
- weight
: PLMD::colvar::ContactMap
, PLMD::logmfd::LogMFD
, PLMD::pamm::HBPammMatrix
- weight_mass
: PLMD::vatom::Center
- Weights
: PLMD::dimred::SMACOF
- weights
: PLMD::function::annfunc::ANN
, PLMD::generic::FitToTemplate
, PLMD::vatom::Center
- weights_
: PLMD::ves::TD_ExponentiallyModifiedGaussian
, PLMD::ves::TD_Gaussian
, PLMD::ves::TD_GeneralizedNormal
, PLMD::ves::TD_LinearCombination
, PLMD::ves::TD_VonMises
- welltemp_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- WellTemperedModifer()
: PLMD::ves::WellTemperedModifer
- wereSet()
: PLMD::CheckInRange
- wgridstride_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- Wham()
: PLMD::wham::Wham
- WhamHistogram()
: PLMD::wham::WhamHistogram
- WhamWeights()
: PLMD::wham::WhamWeights
- what()
: PLMD::Exception
, PLMD::lepton::Exception
, PLMD::Plumed::add_buffer_to< T >
, PLMD::Plumed::Exception
, PLMD::Plumed::LeptonException
, plumed_error
- what_buffer
: plumed_error
- which_cluster
: PLMD::clusters::ClusteringBase
- Whitespace
: PLMD::lepton::ParseToken
- wholemolecules
: PLMD::colvar::MultiColvarTemplate< T >
- WholeMolecules()
: PLMD::generic::WholeMolecules
- width
: PLMD::drr::UIestimator::n_matrix
, PLMD::drr::UIestimator::n_vector< T >
, PLMD::drr::UIestimator::UIestimator
, PLMD::HistogramBead
, PLMD::KernelFunctions
- wipe()
: PLMD::gch::detail::small_vector_base< Allocator, InlineCapacity >
- work
: PLMD::bias::MaxEnt
, PLMD::bias::MovingRestraint
, PLMD::logmfd::LogMFD
, PLMD::PlumedMain
- work_
: PLMD::bias::MetaD
, PLMD::opes::OPESexpanded
, PLMD::opes::OPESmetad< mode >
, PLMD::ves::VesDeltaF
- workspace
: PLMD::lepton::CompiledExpression
- WrapAround()
: PLMD::generic::WrapAround
- write_1D_pmf()
: PLMD::drr::UIestimator::UIestimator
- write_angles
: PLMD::molfile::molfile_plugin_t
- write_bonds
: PLMD::molfile::molfile_plugin_t
- write_files()
: PLMD::drr::UIestimator::UIestimator
- write_final_positions()
: PLMD::cltools::SimpleMD
- write_model_overlap()
: PLMD::isdb::EMMI
- write_positions()
: PLMD::cltools::SimpleMD
- write_positions_first
: PLMD::cltools::SimpleMD
- write_statistics()
: PLMD::cltools::SimpleMD
- write_statistics_first
: PLMD::cltools::SimpleMD
- write_statistics_fp
: PLMD::cltools::SimpleMD
- write_statistics_fp_deleter
: PLMD::cltools::SimpleMD
- write_statistics_last_time_reopened
: PLMD::cltools::SimpleMD
- write_stride_
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- write_structure
: PLMD::molfile::molfile_plugin_t
- write_timestep
: PLMD::molfile::molfile_plugin_t
- write_volumetric_data
: PLMD::molfile::molfile_plugin_t
- write_volumetric_data_ex
: PLMD::molfile::molfile_plugin_t
- writeBasisFunctionsToFile()
: PLMD::ves::BasisFunctions
- writeBiasGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeBiasOutputFiles()
: PLMD::ves::Optimizer
- writeBiasToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeBiasWithoutCutoffGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeBinary()
: PLMD::ActionForInterface
, PLMD::ActionToPutData
, PLMD::DomainDecomposition
, PLMD::PlumedMain
, PLMD::Value
- writeCoeffsInfoToFile()
: PLMD::ves::CoeffsBase
- writeCubeFile()
: PLMD::GridBase
- writeDataDiagonalToFile()
: PLMD::ves::CoeffsMatrix
- writeDataFullToFile()
: PLMD::ves::CoeffsMatrix
- writeDataToFile()
: PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- writeFesGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeFesOutputFiles()
: PLMD::ves::Optimizer
- writeFesProjGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeFesProjOutputFiles()
: PLMD::ves::Optimizer
- writeFesProjToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeFesToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeGaussian()
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- writehead()
: PLMD::drr::UIestimator::UIestimator
- writeHeader()
: PLMD::GridBase
- writeHeaderToFile()
: PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- writeInGraph()
: PLMD::Action
, PLMD::adjmat::ContactMatrix
, PLMD::function::FunctionOfMatrix< T >
, PLMD::function::FunctionOfScalar< T >
, PLMD::function::FunctionOfVector< T >
, PLMD::generic::Print
, PLMD::generic::PrintNDX
, PLMD::gridtools::FunctionOfGrid< T >
- writeIterationCounterAndTimeToFile()
: PLMD::ves::CoeffsBase
- WriteLagrangians()
: PLMD::bias::MaxEnt
- writeLogTargetDistGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeMatrixInfoToFile()
: PLMD::ves::CoeffsMatrix
- writeOutObservable()
: PLMD::fisst::FISST
- writeOutputFiles()
: PLMD::ves::Optimizer
- writeOutRestart()
: PLMD::eds::EDS
, PLMD::fisst::FISST
- WriteStateFull()
: PLMD::Random
- writeStatus()
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- writeTargetDistGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeTargetDistOutputFiles()
: PLMD::ves::Optimizer
- writeTargetDistProjGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeTargetDistProjOutputFiles()
: PLMD::ves::Optimizer
- writeTargetDistProjToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeTargetDistributionToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeTargetDistToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeTimeInfoToFile()
: PLMD::ves::CoeffsBase
- writeToFile()
: PLMD::Grid
, PLMD::GridBase
, PLMD::SparseGrid
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- written
: PLMD::drr::UIestimator::UIestimator
- written_1D
: PLMD::drr::UIestimator::UIestimator
- wStateStride_
: PLMD::opes::OPESexpanded
, PLMD::opes::OPESmetad< mode >
- wsum
: PLMD::mapping::PathDisplacements
- wsum_
: PLMD::eds::EDS