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• OFile() : PLMD::OFile
• Ones() : PLMD::generic::Ones
• onStep() : PLMD::ActionForInterface , PLMD::ActionPilot , PLMD::ActionToPutData , PLMD::DomainDecomposition
• open() : PLMD::FileBase , PLMD::IFile , PLMD::OFile
• OpenMPVars() : PLMD::OpenMP::OpenMPVars
• operator bool() : PLMD::DomainDecomposition::DomainComms , PLMD::FileBase , PLMD::GridBase::AcceleratorHandler , PLMD::Plumed , PLMD::TypesafePtr
• operator const char *() : PLMD::Plumed::CString
• operator plumed() : PLMD::Plumed
• operator!=() : PLMD::lepton::ExpressionTreeNode , PLMD::lepton::Operation , PLMD::Plumed
• operator()() : PLMD::colvar::PathMSDBase::imgOrderByDist , PLMD::colvar::PathMSDBase::imgOrderBySimilarity , PLMD::function::FuncPathGeneral::pairordering , PLMD::function::FuncPathMSD::ordering , PLMD::function::FuncPathMSD::pairordering , PLMD::Matrix< T > , PLMD::maze::tls::delete_ptr , PLMD::Plumed::rethrow_nested , PLMD::Plumed::rethrow_not_nested , PLMD::switchContainers::leptonSwitch::funcAndDeriv , PLMD::TensorGeneric< n, m > , PLMD::VectorGeneric< n > , PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector
• operator*() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType > , PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector
• operator*=() : PLMD::Matrix< T > , PLMD::TensorGeneric< n, m > , PLMD::VectorGeneric< n > , PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector
• operator+() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType > , PLMD::TensorGeneric< n, m > , PLMD::VectorGeneric< n > , PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector
• operator++() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >
• operator+=() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType > , PLMD::Matrix< T > , PLMD::TensorGeneric< n, m > , PLMD::VectorGeneric< n > , PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector
• operator-() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType > , PLMD::TensorGeneric< n, m > , PLMD::VectorGeneric< n > , PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector
• operator--() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType >
• operator-=() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType > , PLMD::Matrix< T > , PLMD::TensorGeneric< n, m > , PLMD::VectorGeneric< n > , PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector
• operator->() : PLMD::gch::small_vector_iterator< Pointer, DifferenceType > , PLMD::GridBase::AcceleratorHandler
• operator/=() : PLMD::TensorGeneric< n, m > , PLMD::VectorGeneric< n >
• operator<() : PLMD::Plumed
• operator<<() : PLMD::Exception , PLMD::ExceptionDebug , PLMD::ExceptionError , PLMD::ExceptionRegisterError , PLMD::ExceptionTypeError
• operator<<=() : PLMD::Exception::Throw
• operator<=() : PLMD::Plumed
• operator=() : PLMD::Action , PLMD::Communicator , PLMD::DLLoader , PLMD::Exception , PLMD::FileBase , PLMD::gch::detail::allocator_inliner< Allocator, false > , PLMD::gch::detail::allocator_inliner< Allocator, true > , PLMD::gch::detail::allocator_interface< Allocator > , PLMD::gch::detail::inline_storage< T, InlineCapacity > , PLMD::gch::detail::inline_storage< T, 0 > , PLMD::gch::detail::small_vector_base< Allocator, InlineCapacity > , PLMD::gch::detail::small_vector_base< Allocator, InlineCapacity >::stack_temporary , PLMD::gch::detail::small_vector_data< Pointer, SizeT, T, InlineCapacity > , PLMD::gch::detail::small_vector_data< Pointer, SizeT, T, 0 > , PLMD::gch::detail::small_vector_data_base< Pointer, SizeT > , PLMD::gch::small_vector< T, InlineCapacity, Allocator > , PLMD::gch::small_vector_iterator< Pointer, DifferenceType > , PLMD::GridBase::AcceleratorHandler , PLMD::lepton::AsmJitRuntimePtr , PLMD::lepton::CompiledExpression , PLMD::lepton::ExpressionProgram , PLMD::lepton::ExpressionTreeNode , PLMD::Matrix< T > , PLMD::OpenMP::OpenMPVars , PLMD::Plumed::add_buffer_to< T > , PLMD::Plumed::CString , PLMD::Plumed , PLMD::Plumed::SafePtr , PLMD::PlumedHandle , PLMD::Stopwatch::Handler , PLMD::Stopwatch , PLMD::Subprocess::Handler , PLMD::switchContainers::leptonSwitch::funcAndDeriv , PLMD::Tools::CriticalSectionWithKey< Key >::Handler , PLMD::TypesafePtr , PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector , PLMD::ves::FermiSwitchingFunction , PLMD::ves::LinearBasisSetExpansion
• operator==() : PLMD::lepton::ExpressionTreeNode , PLMD::lepton::Operation , PLMD::Plumed
• operator>() : PLMD::Plumed
• operator>=() : PLMD::Plumed
• operator[]() : PLMD::gch::small_vector< T, InlineCapacity, Allocator > , PLMD::gch::small_vector_iterator< Pointer, DifferenceType > , PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Const_row , PLMD::MatrixSquareBracketsAccess< T, C, I, J > , PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Row , PLMD::mdMemoryView< N, STRIDE > , PLMD::MemoryView< N > , PLMD::Tools::FastStringUnorderedMap< T > , PLMD::VectorGeneric< n > , PLMD::ves::CoeffsVector
• OPESexpanded() : PLMD::opes::OPESexpanded
• OPESmetad() : PLMD::opes::OPESmetad< mode >
• Opt_Adam() : PLMD::ves::Opt_Adam
• Opt_BachAveragedSGD() : PLMD::ves::Opt_BachAveragedSGD
• Opt_Dummy() : PLMD::ves::Opt_Dummy
• Opt_RobbinsMonroSGD() : PLMD::ves::Opt_RobbinsMonroSGD
• optimalAlignment() : PLMD::RMSD
• optimalAlignment_DDistDRef() : PLMD::RMSD
• optimalAlignment_DDistDRef_Rot_DRotDPos() : PLMD::RMSD
• optimalAlignment_DDistDRef_Rot_DRotDPos_DRotDRef() : PLMD::RMSD
• optimalAlignment_Fit() : PLMD::RMSD
• optimalAlignment_PCA() : PLMD::RMSD
• optimalAlignment_Rot() : PLMD::RMSD
• optimalAlignment_Rot_DRotDRr01() : PLMD::RMSD
• optimalAlignment_SOMA() : PLMD::RMSD
• optimalAlignmentWithCloseStructure() : PLMD::RMSD
• optimize() : PLMD::dimred::ArrangePoints , PLMD::dimred::SMACOF , PLMD::lepton::ParsedExpression , PLMD::maze::Memetic , PLMD::maze::Optimizer , PLMD::maze::Random_Acceleration_MD , PLMD::maze::Random_Walk , PLMD::maze::Simulated_Annealing , PLMD::maze::Steered_MD
• optimizeCoeffs() : PLMD::ves::VesBias
• Optimizer() : PLMD::maze::Optimizer , PLMD::ves::Optimizer
• OptimizerBias() : PLMD::maze::OptimizerBias
• out_of_bounds() : PLMD::maze::Memetic
• OuterProduct() : PLMD::matrixtools::OuterProduct
• OutputBasisFunctions() : PLMD::ves::OutputBasisFunctions
• OutputCluster() : PLMD::clusters::OutputCluster
• outputComponentExists() : PLMD::Keywords
• OutputFesBias() : PLMD::ves::OutputFesBias
• OutputTargetDistribution() : PLMD::ves::OutputTargetDistribution