- r -
- r
: PLMD::Communicator::Request
- radius
: PLMD::molfile::molfile_atom_t
- rand
: PLMD::bias::ExtendedLagrangian
- random
: PLMD::bias::ABMD
, PLMD::ExchangePatterns
- rank
: PLMD::DynamicList< T >
- rcut
: PLMD::crystallization::Steinhardt
- rcut2
: PLMD::crystallization::Fccubic
, PLMD::crystallization::OrientationSphere
, PLMD::crystallization::SimpleCubic
, PLMD::crystallization::Steinhardt
, PLMD::crystallization::Tetrahedral
, PLMD::multicolvar::Bridge
, PLMD::multicolvar::CoordinationNumbers
, PLMD::multicolvar::LocalAverage
- rcut2_1
: PLMD::multicolvar::Angles
- rcut2_2
: PLMD::multicolvar::Angles
- read
: PLMD::IFile::Field
- read_angles
: PLMD::molfile::molfile_plugin_t
- read_backbone
: PLMD::SetupMolInfo
- read_bonds
: PLMD::molfile::molfile_plugin_t
- read_molecule_metadata
: PLMD::molfile::molfile_plugin_t
- read_next_timestep
: PLMD::molfile::molfile_plugin_t
- read_qm_metadata
: PLMD::molfile::molfile_plugin_t
- read_qm_rundata
: PLMD::molfile::molfile_plugin_t
- read_qm_timestep_metadata
: PLMD::molfile::molfile_plugin_t
- read_rawgraphics
: PLMD::molfile::molfile_plugin_t
- read_structure
: PLMD::molfile::molfile_plugin_t
- read_timestep
: PLMD::molfile::molfile_plugin_t
- read_timestep_metadata
: PLMD::molfile::molfile_plugin_t
- read_volumetric_data
: PLMD::molfile::molfile_plugin_t
- read_volumetric_metadata
: PLMD::molfile::molfile_plugin_t
- readvals
: PLMD::generic::Read
- reduced
: PLMD::NeighborList
, PLMD::Pbc
- reference
: PLMD::colvar::ContactMap
, PLMD::colvar::PathMSDBase
, PLMD::generic::WrapAround
, PLMD::Plumed
, PLMD::RMSD
, PLMD::RMSDCoreData
- reference_args
: PLMD::ReferenceArguments
- reference_atoms
: PLMD::ReferenceAtoms
- reference_center
: PLMD::RMSD
- reference_center_is_calculated
: PLMD::RMSD
- reference_center_is_removed
: PLMD::RMSD
- references
: PLMD::secondarystructure::SecondaryStructureRMSD
- remark
: PLMD::PDB
- remarklen
: PLMD::molfile::molfile_metadata_t
- remarks
: PLMD::molfile::molfile_metadata_t
- requestlist_
: PLMD::NeighborList
- rescaledToBias
: PLMD::BiasRepresentation
- reserved_keys
: PLMD::Keywords
- resid
: PLMD::molfile::md_atom
, PLMD::molfile::molfile_atom_t
- residue
: PLMD::PDB
- residueNames
: PLMD::generic::DumpAtoms
- residuenames
: PLMD::PDB
- residueNumbers
: PLMD::generic::DumpAtoms
- resname
: PLMD::molfile::md_atom
, PLMD::molfile::molfile_atom_t
- restart
: PLMD::Action
, PLMD::PlumedMain
- retrieve_only_rotation
: PLMD::RMSDCoreData
- reusing_data
: PLMD::analysis::Analysis
- rev
: PLMD::molfile::md_file
- reweight_factor
: PLMD::bias::MetaD
- rewf_grid_
: PLMD::bias::MetaD
- rewf_ustride_
: PLMD::bias::MetaD
- rfile
: PLMD::analysis::Analysis
- rg_type
: PLMD::colvar::Gyration
- rmsd
: PLMD::colvar::MultiRMSD
, PLMD::colvar::PCARMSD
, PLMD::colvar::RMSD
- RNMX
: PLMD::Random
- rot
: PLMD::ReferenceValuePack
- rotate
: PLMD::generic::Print
- rotateArguments
: PLMD::generic::Print
- rotateCountdown
: PLMD::generic::Print
- rotateLast
: PLMD::generic::Print
- rotation
: PLMD::RMSDCoreData
- rotationmatrix
: PLMD::crystallization::Fccubic
- rotmat0on1
: PLMD::Kearsley
- rotmat1on0
: PLMD::Kearsley
- rr00
: PLMD::RMSDCoreData
- rr11
: PLMD::RMSDCoreData
- rstride
: PLMD::multicolvar::MultiColvarDensity
- rtemp
: PLMD::analysis::Analysis
- run
: PLMD::molfile::molfile_qm_t
- running
: PLMD::Stopwatch::Watch
- runtitle
: PLMD::molfile::molfile_qm_sysinfo_t
- runtype
: PLMD::molfile::molfile_qm_sysinfo_t
- rw
: PLMD::Matrix< T >