- o -
- occupancies
: PLMD::molfile::molfile_qm_wavefunction_t
- occupancy
: PLMD::molfile::molfile_atom_t
, PLMD::PDB
- of
: PLMD::generic::DumpAtoms
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpForces
, PLMD::generic::DumpProjections
, PLMD::multicolvar::DumpMultiColvar
- offset
: PLMD::bias::LWalls
, PLMD::bias::UWalls
, PLMD::manyrestraints::UWalls
- ofile
: PLMD::analysis::Committor
, PLMD::generic::Debug
, PLMD::generic::Print
- ofilename
: PLMD::analysis::ClassicalMultiDimensionalScaling
- ofmt
: PLMD::analysis::Analysis
- oind
: PLMD::ReferenceValuePack
- oind_set
: PLMD::ReferenceValuePack
- old_norm
: PLMD::analysis::Analysis
- oldaa
: PLMD::bias::MovingRestraint
- olddpotdk
: PLMD::bias::MovingRestraint
- oldf
: PLMD::bias::MovingRestraint
- oldk
: PLMD::bias::MovingRestraint
- on
: PLMD::Atoms::DomainDecomposition
- onoff
: PLMD::DynamicList< T >
- open_file_read
: PLMD::molfile::molfile_plugin_t
- open_file_write
: PLMD::molfile::molfile_plugin_t
- options
: PLMD::Action
- orbital_energies
: PLMD::molfile::molfile_qm_wavefunction_t
- orbital_ids
: PLMD::molfile::molfile_qm_wavefunction_t
- orient0
: PLMD::multicolvar::NumberOfLinks
- orient1
: PLMD::multicolvar::NumberOfLinks
- origin
: PLMD::molfile::molfile_volumetric_t
, PLMD::multicolvar::VolumeAround
, PLMD::multicolvar::VolumeCavity
, PLMD::multicolvar::VolumeInCylinder
, PLMD::multicolvar::VolumeTetrapore
- oss
: PLMD::OFile
- out
: PLMD::CLToolMain
- outhills
: PLMD::function::FuncSumHills
- outhisto
: PLMD::function::FuncSumHills
- output
: PLMD::generic::EffectiveEnergyDrift
- outputForces
: PLMD::bias::Bias