Here is a list of all class members with links to the classes they belong to:
- o -
- occupancies
: PLMD::molfile::molfile_qm_wavefunction_t
- occupancy
: PLMD::molfile::molfile_atom_t
, PLMD::PDB
- of
: PLMD::generic::DumpAtoms
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpForces
, PLMD::generic::DumpProjections
, PLMD::multicolvar::DumpMultiColvar
- offset
: PLMD::bias::LWalls
, PLMD::bias::UWalls
, PLMD::manyrestraints::UWalls
- ofile
: PLMD::analysis::Committor
, PLMD::generic::Print
- OFile()
: PLMD::OFile
- ofilename
: PLMD::analysis::ClassicalMultiDimensionalScaling
- ofmt
: PLMD::analysis::Analysis
- old_norm
: PLMD::analysis::Analysis
- oldaa
: PLMD::bias::MovingRestraint
- olddpotdk
: PLMD::bias::MovingRestraint
- oldf
: PLMD::bias::MovingRestraint
- oldk
: PLMD::bias::MovingRestraint
- on
: PLMD::Atoms::DomainDecomposition
- onoff
: PLMD::DynamicList< T >
- onStep()
: PLMD::ActionPilot
- open()
: PLMD::FileBase
, PLMD::IFile
, PLMD::OFile
- open_file_read
: PLMD::molfile::molfile_plugin_t
- open_file_write
: PLMD::molfile::molfile_plugin_t
- operator bool()
: PLMD::Atoms::DomainDecomposition
, PLMD::FileBase
- operator double()
: PLMD::Stopwatch::Time
- operator plumed()
: PLMD::Plumed
- operator!=
: PLMD::AtomNumber
- operator()()
: PLMD::colvar::PathMSDBase::imgOrderByDist
, PLMD::colvar::PathMSDBase::imgOrderBySimilarity
, PLMD::DynamicList< T >
, PLMD::function::FuncPathMSD::ordering
, PLMD::function::FuncPathMSD::pairordering
, PLMD::Matrix< T >
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator*
: PLMD::Matrix< T >
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator*=()
: PLMD::Matrix< T >
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator+()
: PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator+=()
: PLMD::Matrix< T >
, PLMD::Stopwatch::Time
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator-()
: PLMD::Stopwatch::Time
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator-=()
: PLMD::Matrix< T >
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator/
: PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator/=()
: PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator<
: PLMD::AtomNumber
- operator<<
: PLMD::ActionRegister
, PLMD::Citations
, PLMD::CLToolRegister
, PLMD::Matrix< T >
, PLMD::OFile
, PLMD::PDB
, PLMD::Random
, PLMD::Stopwatch
- operator<=
: PLMD::AtomNumber
- operator=()
: PLMD::Action
, PLMD::Communicator
, PLMD::DLLoader
, PLMD::FileBase
, PLMD::Matrix< T >
, PLMD::Plumed
- operator==
: PLMD::AtomNumber
- operator>
: PLMD::AtomNumber
- operator>=
: PLMD::AtomNumber
- operator>>
: PLMD::Random
- operator[]()
: PLMD::DynamicList< T >
, PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Const_row
, PLMD::MatrixSquareBracketsAccess< T, C, I, J >
, PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Row
, PLMD::VectorGeneric< n >
- OPTIMAL
: PLMD::RMSD
- OPTIMAL_FAST
: PLMD::RMSD
- OptimalAlignment()
: PLMD::OptimalAlignment
- optimalAlignment()
: PLMD::RMSD
- OptimalRMSD()
: PLMD::OptimalRMSD
- optional
: PLMD::Keywords::KeyType
- options
: PLMD::Action
- orbital_energies
: PLMD::molfile::molfile_qm_wavefunction_t
- orbital_ids
: PLMD::molfile::molfile_qm_wavefunction_t
- orient0
: PLMD::multicolvar::AdjacencyMatrixAction
, PLMD::multicolvar::NumberOfLinks
- orient1
: PLMD::multicolvar::AdjacencyMatrixAction
, PLMD::multicolvar::NumberOfLinks
- OrientationSphere()
: PLMD::crystallization::OrientationSphere
, PLMD::crystallization::VectorMultiColvar
- origin
: PLMD::molfile::molfile_volumetric_t
, PLMD::multicolvar::VolumeAround
- orthorombic
: PLMD::Pbc
- oss
: PLMD::OFile
- out
: PLMD::CLToolMain
- outhills
: PLMD::function::FuncSumHills
- outhisto
: PLMD::function::FuncSumHills
- outputComponentExists()
: PLMD::Keywords
- outputForces
: PLMD::bias::Bias