Here is a list of all class members with links to the classes they belong to:
- f -
- f
: PLMD::molfile::md_file
- f_size
: PLMD::molfile::trx_hdr
- fact
: PLMD::function::Ensemble
, PLMD::Random
- fake_arg_names
: PLMD::ReferenceConfiguration
- fake_atom_numbers
: PLMD::ReferenceConfiguration
- fake_metric
: PLMD::ReferenceConfiguration
- fake_refargs
: PLMD::ReferenceConfiguration
- fake_refatoms
: PLMD::ReferenceConfiguration
- FakeFrame()
: PLMD::FakeFrame
- fast
: PLMD::OptimalAlignment
, PLMD::OptimalRMSD
- fastpow()
: PLMD::Tools
- Fccubic()
: PLMD::crystallization::Fccubic
- fclose()
: PLMD::Action
, PLMD::PlumedMain
- fenergy
: PLMD::analysis::Histogram
- fflush()
: PLMD::Action
, PLMD::PlumedMain
- fframes
: PLMD::mapping::Mapping
- Field()
: PLMD::IFile::Field
- FieldBase()
: PLMD::FileBase::FieldBase
- fieldChanged
: PLMD::OFile
- FieldExist()
: PLMD::IFile
- fieldFmt
: PLMD::OFile
- fields
: PLMD::IFile
, PLMD::OFile
- file
: PLMD::analysis::Committor
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpForces
, PLMD::generic::DumpProjections
, PLMD::generic::Print
- FileBase()
: PLMD::FileBase
- FileExist()
: PLMD::FileBase
- filename
: PLMD::generic::Read
- filename_extension
: PLMD::molfile::molfile_plugin_t
- filenames
: PLMD::function::FilesHandler
- files
: PLMD::Action
, PLMD::PlumedMain
- files_iterator
: PLMD::Action
, PLMD::PlumedMain
- FilesHandler()
: PLMD::function::FilesHandler
- final_derivatives
: PLMD::vesselbase::StoreDataVessel
- final_value
: PLMD::vesselbase::FunctionVessel
- finalize
: plumed_plumedmain_function_holder
- finalizeWeights()
: PLMD::analysis::Analysis
- findBox()
: PLMD::CInterpolation
- findCell()
: PLMD::LinkCells
- findCvsAndPeriodic()
: PLMD::cltools::CLToolSumHills
- findField()
: PLMD::IFile
, PLMD::OFile
- findMyCell()
: PLMD::LinkCells
- finish()
: PLMD::crystallization::VectorMean
, PLMD::mapping::SpathVessel
, PLMD::mapping::ZpathVessel
, PLMD::multicolvar::AdjacencyMatrixVessel
, PLMD::multicolvar::DHEnergy
, PLMD::vesselbase::Between
, PLMD::vesselbase::BridgeVessel
, PLMD::vesselbase::LessThan
, PLMD::vesselbase::Max
, PLMD::vesselbase::Mean
, PLMD::vesselbase::Min
, PLMD::vesselbase::Moments
, PLMD::vesselbase::MoreThan
, PLMD::vesselbase::ShortcutVessel
, PLMD::vesselbase::StoreDataVessel
, PLMD::vesselbase::Sum
, PLMD::vesselbase::Vessel
- finishComputations()
: PLMD::vesselbase::ActionWithVessel
- finished_read
: PLMD::vesselbase::Vessel
- finishTask()
: PLMD::multicolvar::StoreCentralAtomsVessel
, PLMD::vesselbase::StoreDataVessel
- finishTaskListUpdate()
: PLMD::multicolvar::ActionVolume
, PLMD::multicolvar::MultiColvar
, PLMD::multicolvar::MultiColvarFunction
, PLMD::secondarystructure::SecondaryStructureRMSD
, PLMD::vesselbase::ActionWithVessel
- finishWeightedAverageCalculation()
: PLMD::crystallization::VectorMultiColvar
, PLMD::multicolvar::MultiColvarBase
- finiteDifferenceGaussian()
: PLMD::bias::MetaD
- finiteDifferenceInterface()
: PLMD::Kearsley
- firstAnalysisDone
: PLMD::analysis::Analysis
- firstcall
: PLMD::crystallization::VectorMultiColvar
- firsttime
: PLMD::colvar::CoordinationBase
, PLMD::multicolvar::ActionVolume
, PLMD::multicolvar::MultiColvarBase
- firstTime
: PLMD::RDC
- firsttime
: PLMD::secondarystructure::SecondaryStructureRMSD
- FitToTemplate()
: PLMD::generic::FitToTemplate
- fixdist
: PLMD::RDC
- flag
: PLMD::Keywords::KeyType
- flexbin
: PLMD::bias::MetaD
- FlexibleBin()
: PLMD::FlexibleBin
- flush()
: PLMD::FileBase
- Flush()
: PLMD::generic::Flush
- flush()
: PLMD::OFile
- fmt
: PLMD::analysis::Committor
, PLMD::bias::MetaD
, PLMD::function::FuncSumHills
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpProjections
, PLMD::generic::Print
, PLMD::molfile::md_file
- fmt_
: PLMD::Grid
- fmt_gro_box
: PLMD::generic::DumpAtoms
- fmt_gro_pos
: PLMD::generic::DumpAtoms
- fmt_xyz
: PLMD::generic::DumpAtoms
, PLMD::multicolvar::DumpMultiColvar
- fmtField()
: PLMD::OFile
- fopen()
: PLMD::Action
, PLMD::PlumedMain
- forceOnEnergy
: PLMD::ActionAtomistic
, PLMD::Atoms
- forces
: PLMD::ActionAtomistic
, PLMD::Atoms
, PLMD::Colvar
, PLMD::IMD
- forcesHaveBeenSet
: PLMD::Atoms
- forcesToApply
: PLMD::mapping::Mapping
, PLMD::multicolvar::MultiColvarBase
, PLMD::secondarystructure::SecondaryStructureRMSD
- foreignDeltaBias
: PLMD::GREX
- format()
: PLMD::Exception
- foundoneclose
: PLMD::mapping::SpathVessel
- fp
: PLMD::FileBase
- frames
: PLMD::MultiReferenceBase
- freq
: PLMD::analysis::Analysis
- fromString()
: PLMD::Random
- fscale
: PLMD::IMD
- ftype
: PLMD::MultiDomainRMSD
- fullatomlist_
: PLMD::NeighborList
- fullList
: PLMD::Atoms
- fullSearch()
: PLMD::Pbc
- fullSize()
: PLMD::DynamicList< T >
- fullTaskList
: PLMD::vesselbase::ActionWithVessel
- func
: PLMD::function::Matheval
- funcname
: PLMD::Grid
- FuncPathMSD()
: PLMD::function::FuncPathMSD
- FuncSumHills()
: PLMD::function::FuncSumHills
- Function()
: PLMD::function::Function
- function
: PLMD::multicolvar::AdjacencyMatrixVessel
- function_description()
: PLMD::crystallization::VectorMean
, PLMD::mapping::SpathVessel
, PLMD::mapping::ZpathVessel
, PLMD::multicolvar::DHEnergy
, PLMD::vesselbase::Between
, PLMD::vesselbase::FunctionVessel
, PLMD::vesselbase::LessThan
, PLMD::vesselbase::Max
, PLMD::vesselbase::Mean
, PLMD::vesselbase::Min
, PLMD::vesselbase::MoreThan
, PLMD::vesselbase::Sum
- functions
: PLMD::vesselbase::ActionWithVessel
- FunctionVessel
: PLMD::vesselbase::ActionWithVessel
, PLMD::vesselbase::FunctionVessel
- fvec
: PLMD::vesselbase::StoreDataVessel
- fx
: PLMD::MDAtomsTyped< T >
- fy
: PLMD::MDAtomsTyped< T >
- fz
: PLMD::MDAtomsTyped< T >