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- r -
r :
PLMD::Communicator::Request
radius :
PLMD::molfile::molfile_atom_t
random :
PLMD::bias::ABMD
,
PLMD::ExchangePatterns
rank :
PLMD::DynamicList< T >
read :
PLMD::IFile::Field
read_angles :
PLMD::molfile::molfile_plugin_t
read_backbone :
PLMD::SetupMolInfo
read_bonds :
PLMD::molfile::molfile_plugin_t
read_molecule_metadata :
PLMD::molfile::molfile_plugin_t
read_next_timestep :
PLMD::molfile::molfile_plugin_t
read_qm_metadata :
PLMD::molfile::molfile_plugin_t
read_qm_rundata :
PLMD::molfile::molfile_plugin_t
read_qm_timestep_metadata :
PLMD::molfile::molfile_plugin_t
read_rawgraphics :
PLMD::molfile::molfile_plugin_t
read_structure :
PLMD::molfile::molfile_plugin_t
read_timestep :
PLMD::molfile::molfile_plugin_t
read_timestep_metadata :
PLMD::molfile::molfile_plugin_t
read_volumetric_data :
PLMD::molfile::molfile_plugin_t
read_volumetric_metadata :
PLMD::molfile::molfile_plugin_t
readvals :
PLMD::generic::Read
reduced :
PLMD::NeighborList
,
PLMD::Pbc
reference :
PLMD::colvar::ContactMap
,
PLMD::colvar::PathMSDBase
,
PLMD::RMSD
reference_args :
PLMD::ReferenceArguments
reference_atoms :
PLMD::ReferenceAtoms
references :
PLMD::secondarystructure::SecondaryStructureRMSD
remark :
PLMD::PDB
remarklen :
PLMD::molfile::molfile_metadata_t
remarks :
PLMD::molfile::molfile_metadata_t
requestlist_ :
PLMD::NeighborList
rescaledToBias :
PLMD::BiasRepresentation
reserved_keys :
PLMD::Keywords
resid :
PLMD::molfile::md_atom
,
PLMD::molfile::molfile_atom_t
residue :
PLMD::PDB
residueNames :
PLMD::generic::DumpAtoms
residuenames :
PLMD::PDB
residueNumbers :
PLMD::generic::DumpAtoms
resname :
PLMD::molfile::md_atom
,
PLMD::molfile::molfile_atom_t
restart :
PLMD::PlumedMain
reusing_data :
PLMD::analysis::Analysis
rev :
PLMD::molfile::md_file
rfile :
PLMD::analysis::Analysis
rg_type :
PLMD::colvar::Gyration
rmsd :
PLMD::colvar::MultiRMSD
,
PLMD::colvar::RMSD
RNMX :
PLMD::Random
rotate :
PLMD::generic::Print
rotateArguments :
PLMD::generic::Print
rotateCountdown :
PLMD::generic::Print
rotateLast :
PLMD::generic::Print
rotmat0on1 :
PLMD::Kearsley
rotmat1on0 :
PLMD::Kearsley
rtemp :
PLMD::analysis::Analysis
run :
PLMD::molfile::molfile_qm_t
running :
PLMD::Stopwatch::Watch
runtitle :
PLMD::molfile::molfile_qm_sysinfo_t
runtype :
PLMD::molfile::molfile_qm_sysinfo_t
rw :
PLMD::Matrix< T >
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