PLMD::adjmat::OutputCluster Member List

This is the complete list of members for PLMD::adjmat::OutputCluster, including all inherited members.

Action(const ActionOptions &)	PLMD::Action	explicit
Action(const Action &a)=delete	PLMD::Action	private
ActionPilot(const ActionOptions &)	PLMD::ActionPilot	explicit
activate()	PLMD::Action	virtual
active	PLMD::Action	private
addDependency(Action *)	PLMD::Action
adj_list	PLMD::adjmat::OutputCluster	private
after	PLMD::Action	private
apply() override	PLMD::adjmat::OutputCluster	inlinevirtual
atomsin	PLMD::adjmat::OutputCluster	private
beforeUpdate()	PLMD::Action	inlinevirtual
calculate() override	PLMD::adjmat::OutputCluster	inlinevirtual
calculateFromPDB(const PDB &)	PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::Action	virtual
checkNeedsGradients() const	PLMD::Action	inlinevirtual
checkNumericalDerivatives() const	PLMD::Action	inlinevirtual
checkRead()	PLMD::Action
checkUpdate() const	PLMD::Action
cite(const std::string &s)	PLMD::Action
clearDependencies()	PLMD::Action
clearOptions()	PLMD::Action	virtual
cluster_sizes	PLMD::adjmat::OutputCluster	private
clustr	PLMD::adjmat::OutputCluster	private
comm	PLMD::Action
deactivate()	PLMD::Action	inlinevirtual
Dependencies typedef	PLMD::Action
doCheckPoint	PLMD::Action	private
error(const std::string &msg) const	PLMD::Action
exit(int c=0)	PLMD::Action
explore(const unsigned &index, const unsigned &depth)	PLMD::adjmat::OutputCluster	private
explore_dfs(const unsigned &index)	PLMD::adjmat::OutputCluster	private
fclose(FILE *fp)	PLMD::Action
fflush()	PLMD::Action
files	PLMD::Action
fopen(const char *path, const char *mode)	PLMD::Action
getCPT() const	PLMD::Action
getDependencies() const	PLMD::Action	inline
getDocumentation() const	PLMD::Action	virtual
getExchangeStep() const	PLMD::Action
getKeyword(const std::string &key)	PLMD::Action
getLabel() const	PLMD::Action	inline
getName() const	PLMD::Action	inline
getRestart() const	PLMD::Action	inline
getStep() const	PLMD::Action
getStride() const	PLMD::ActionPilot
getTime() const	PLMD::Action
getTimeStep() const	PLMD::Action
isActive() const	PLMD::Action	inline
isOptionOn(const std::string &s) const	PLMD::Action	inline
keywords	PLMD::Action
label	PLMD::Action	private
line	PLMD::Action	private
lockRequests()	PLMD::Action	inlinevirtual
log	PLMD::Action
makewhole	PLMD::adjmat::OutputCluster	private
maxdepth	PLMD::adjmat::OutputCluster	private
maxgoes	PLMD::adjmat::OutputCluster	private
multi_sim_comm	PLMD::Action
myatoms	PLMD::adjmat::OutputCluster	private
myclusters	PLMD::adjmat::OutputCluster	private
name	PLMD::Action	private
nneigh	PLMD::adjmat::OutputCluster	private
number_of_cluster	PLMD::adjmat::OutputCluster	private
ofile	PLMD::adjmat::OutputCluster	private
onStep() const	PLMD::ActionPilot	virtual
operator=(const Action &a)=delete	PLMD::Action	private
options	PLMD::Action	private
output_xyz	PLMD::adjmat::OutputCluster	private
OutputCluster(const ActionOptions &)	PLMD::adjmat::OutputCluster	explicit
parse(const std::string &key, T &t)	PLMD::Action
parseFlag(const std::string &key, bool &t)	PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)	PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)	PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)	PLMD::Action
plumed	PLMD::Action
prepare()	PLMD::Action	virtual
rcut2	PLMD::adjmat::OutputCluster	private
readAtomsFromPDB(const PDB &)	PLMD::Action	inlinevirtual
registerKeywords(Keywords &keys)	PLMD::adjmat::OutputCluster	static
replica_index	PLMD::Action	private
restart	PLMD::Action	private
runFinalJobs()	PLMD::Action	inlinevirtual
setOption(const std::string &s)	PLMD::Action	virtual
setStride(const int &n)	PLMD::ActionPilot
stride	PLMD::ActionPilot	private
unlockRequests()	PLMD::Action	inlinevirtual
update() override	PLMD::adjmat::OutputCluster	virtual
update_from	PLMD::Action	private
update_until	PLMD::Action	private
visited	PLMD::adjmat::OutputCluster	private
warning(const std::string &msg)	PLMD::Action
which_cluster	PLMD::adjmat::OutputCluster	private
~Action()	PLMD::Action	virtual