PLMD::manyrestraints::UWalls Member List

This is the complete list of members for PLMD::manyrestraints::UWalls, including all inherited members.

Action(const ActionOptions &)	PLMD::Action	explicit
ActionPilot(const ActionOptions &)	PLMD::ActionPilot	explicit
ActionWithInputVessel(const ActionOptions &)	PLMD::vesselbase::ActionWithInputVessel	explicit
ActionWithValue(const ActionOptions &ao)	PLMD::ActionWithValue	explicit
ActionWithVessel(const ActionOptions &ao)	PLMD::vesselbase::ActionWithVessel	explicit
activate()	PLMD::Action	virtual
activateTheseTasks(std::vector< unsigned > &addtionalTasks)	PLMD::vesselbase::ActionWithVessel
addBridgeForces(const std::vector< double > &bb)	PLMD::vesselbase::ActionWithInputVessel	inlinevirtual
addBridgingVessel(ActionWithVessel *tome)	PLMD::vesselbase::ActionWithVessel	protected
addComponent(const std::string &name)	PLMD::ActionWithValue
addComponentWithDerivatives(const std::string &name)	PLMD::ActionWithValue
addDependency(Action *)	PLMD::Action
addForcesOnArguments(const std::vector< double > &forces)	PLMD::vesselbase::ActionWithInputVessel	protected
addTaskToList(const unsigned &taskCode)	PLMD::vesselbase::ActionWithVessel	protected
addValue()	PLMD::ActionWithValue
addValueWithDerivatives()	PLMD::ActionWithValue
addVessel(const std::string &name, const std::string &input, const int numlab=0)	PLMD::vesselbase::ActionWithVessel	protected
addVessel(Vessel *vv)	PLMD::vesselbase::ActionWithVessel	protected
apply()	PLMD::manyrestraints::ManyRestraintsBase	virtual
applyBridgeForces(const std::vector< double > &bb)	PLMD::manyrestraints::ManyRestraintsBase	inlinevirtual
at	PLMD::manyrestraints::UWalls	private
bridgeVariable	PLMD::vesselbase::ActionWithVessel	protected
buildDataStashes(const bool &allow_wcutoff, const double &wtol)	PLMD::vesselbase::ActionWithVessel
calcPotential(const double &val, double &df) const	PLMD::manyrestraints::UWalls	virtual
calculate()	PLMD::manyrestraints::ManyRestraintsBase	inlinevirtual
calculateAllVessels(const unsigned &taskCode, MultiValue &myvals, MultiValue &bvals, std::vector< double > &buffer, std::vector< unsigned > &der_list)	PLMD::vesselbase::ActionWithVessel	protected
calculateFromPDB(const PDB &)	PLMD::Action
PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::Action	virtual
PLMD::vesselbase::ActionWithInputVessel::calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::vesselbase::ActionWithInputVessel	virtual
checkFieldsAllowed()	PLMD::ActionWithValue	inlinevirtual
checkNeedsGradients() const	PLMD::Action	inlinevirtual
checkNumericalDerivatives() const	PLMD::ActionWithValue	inlinevirtual
checkRead()	PLMD::Action
checkUpdate() const	PLMD::Action
cite(const std::string &s)	PLMD::Action
clearDependencies()	PLMD::Action
clearDerivatives()	PLMD::manyrestraints::ManyRestraintsBase	inlinevirtual
clearInputForces()	PLMD::ActionWithValue
clearOptions()	PLMD::Action	virtual
comm	PLMD::Action
componentIsNotPeriodic(const std::string &name)	PLMD::ActionWithValue
componentIsPeriodic(const std::string &name, const std::string &min, const std::string &max)	PLMD::ActionWithValue
componentsAreNotOptional(Keywords &keys)	PLMD::ActionWithValue	static
contributorsAreUnlocked	PLMD::vesselbase::ActionWithVessel	protected
copyOutput(const std::string &name) const	PLMD::ActionWithValue
copyOutput(const unsigned &n) const	PLMD::ActionWithValue
deactivate()	PLMD::Action	inlinevirtual
deactivate_task(const unsigned &task_index)	PLMD::manyrestraints::ManyRestraintsBase	inlinevirtual
deactivateAllTasks()	PLMD::vesselbase::ActionWithVessel	protected
deactivateTasksInRange(const unsigned &lower, const unsigned &upper)	PLMD::vesselbase::ActionWithVessel	protected
Dependencies typedef	PLMD::Action
derivativesAreRequired() const	PLMD::vesselbase::ActionWithVessel	inline
doJobsRequiredBeforeTaskList()	PLMD::manyrestraints::ManyRestraintsBase	virtual
doNotCalculateDerivatives() const	PLMD::ActionWithValue	inline
eps	PLMD::manyrestraints::UWalls	private
error(const std::string &msg) const	PLMD::Action
exists(const std::string &name) const	PLMD::ActionWithValue
exit(int c=0)	PLMD::Action
exp	PLMD::manyrestraints::UWalls	private
fclose(FILE *fp)	PLMD::Action
fflush()	PLMD::Action
files	PLMD::Action
files_iterator typedef	PLMD::Action
finishComputations(const std::vector< double > &buffer)	PLMD::vesselbase::ActionWithVessel	virtual
finishTaskListUpdate()	PLMD::vesselbase::ActionWithVessel	inlinevirtual
fopen(const char *path, const char *mode)	PLMD::Action
getActiveTask(const unsigned &ii) const	PLMD::vesselbase::ActionWithVessel	inlineprotected
getComponentsList() const	PLMD::ActionWithValue
getComponentsVector() const	PLMD::ActionWithValue
getCurrentNumberOfActiveTasks() const	PLMD::vesselbase::ActionWithVessel	inlineprotected
getDependencies() const	PLMD::Action	inline
getDocumentation() const	PLMD::Action	virtual
getExchangeStep() const	PLMD::Action
getForcesFromVessels(std::vector< double > &forcesToApply)	PLMD::vesselbase::ActionWithVessel	protected
getFullNumberOfTasks() const	PLMD::vesselbase::ActionWithVessel	inline
getLabel() const	PLMD::Action	inline
getName() const	PLMD::Action	inline
getNLTolerance() const	PLMD::vesselbase::ActionWithVessel	inlineprotected
getNumberOfComponents() const	PLMD::ActionWithValue	inline
getNumberOfDerivatives()	PLMD::manyrestraints::ManyRestraintsBase	inlinevirtual
getNumberOfQuantities()	PLMD::vesselbase::ActionWithVessel	inlinevirtual
getNumberOfVessels() const	PLMD::vesselbase::ActionWithVessel	inlineprotected
getOutputQuantity(const unsigned j) const	PLMD::ActionWithValue	inline
getOutputQuantity(const std::string &name) const	PLMD::ActionWithValue	inline
getPntrToArgument()	PLMD::vesselbase::ActionWithInputVessel	inlineprotected
getPntrToComponent(int i)	PLMD::ActionWithValue	protected
getPntrToComponent(const std::string &name)	PLMD::ActionWithValue	protected
getPntrToValue()	PLMD::ActionWithValue	protected
getPntrToVessel(const unsigned &i)	PLMD::vesselbase::ActionWithVessel	inlineprotected
getPositionInFullTaskList(const unsigned &ii) const	PLMD::vesselbase::ActionWithVessel	inline
getRestart() const	PLMD::Action	inline
getSizeOfBuffer(unsigned &bufsize)	PLMD::vesselbase::ActionWithVessel	protected
getStep() const	PLMD::Action
getStride() const	PLMD::ActionPilot	protected
getTaskCode(const unsigned &ii) const	PLMD::vesselbase::ActionWithVessel	inline
getTime() const	PLMD::Action
getTimeStep() const	PLMD::Action
getTolerance() const	PLMD::vesselbase::ActionWithVessel	inlineprotected
getVesselWithName(const std::string &mynam)	PLMD::vesselbase::ActionWithVessel
isActive() const	PLMD::Action	inline
isOptionOn(const std::string &s) const	PLMD::Action	inline
isPeriodic()	PLMD::manyrestraints::ManyRestraintsBase	inlinevirtual
kappa	PLMD::manyrestraints::UWalls	private
keywords	PLMD::Action
lockContributors()	PLMD::vesselbase::ActionWithVessel
lockRequests()	PLMD::Action	inlinevirtual
log	PLMD::Action
ManyRestraintsBase(const ActionOptions &)	PLMD::manyrestraints::ManyRestraintsBase	explicit
multi_sim_comm	PLMD::Action
needsDerivatives()	PLMD::vesselbase::ActionWithVessel	protected
noAnalyticalDerivatives(Keywords &keys)	PLMD::ActionWithValue	static
offset	PLMD::manyrestraints::UWalls	private
onStep() const	PLMD::ActionPilot
parse(const std::string &key, T &t)	PLMD::Action
parseFlag(const std::string &key, bool &t)	PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)	PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)	PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)	PLMD::Action
performTask(const unsigned &, const unsigned &, MultiValue &) const	PLMD::manyrestraints::ManyRestraintsBase	inlinevirtual
plumed	PLMD::Action
prepare()	PLMD::Action	virtual
readArgument(const std::string &type)	PLMD::vesselbase::ActionWithInputVessel	protected
readAtomsFromPDB(const PDB &)	PLMD::Action	inlinevirtual
readVesselKeywords()	PLMD::vesselbase::ActionWithVessel	protected
registerKeywords(Keywords &keys)	PLMD::manyrestraints::UWalls	static
resizeFunctions()	PLMD::vesselbase::ActionWithVessel	protected
retrieveDomain(std::string &min, std::string &max)	PLMD::vesselbase::ActionWithVessel	virtual
runAllTasks()	PLMD::vesselbase::ActionWithVessel	protected
runFinalJobs()	PLMD::Action	inlinevirtual
serialCalculation() const	PLMD::vesselbase::ActionWithVessel	inlineprotected
setGradientsIfNeeded()	PLMD::ActionWithValue
setLowMemOption(const bool &)	PLMD::vesselbase::ActionWithVessel	inlineprotected
setNotPeriodic()	PLMD::ActionWithValue
setOption(const std::string &s)	PLMD::Action	virtual
setPeriodic(const std::string &min, const std::string &max)	PLMD::ActionWithValue
setValue(const double &d)	PLMD::ActionWithValue	inlineprotected
setValue(Value *, double)	PLMD::ActionWithValue
transformBridgedDerivatives(const unsigned &current, MultiValue &invals, MultiValue &outvals) const	PLMD::manyrestraints::ManyRestraintsBase	virtual
turnOnDerivatives()	PLMD::ActionWithValue	virtual
unlockContributors()	PLMD::vesselbase::ActionWithVessel
unlockRequests()	PLMD::Action	inlinevirtual
update()	PLMD::Action	inlinevirtual
useCustomisableComponents(Keywords &keys)	PLMD::ActionWithValue	static
useNumericalDerivatives()	PLMD::ActionWithValue	inline
usingLowMem() const	PLMD::vesselbase::ActionWithVessel	inlineprotected
UWalls(const ActionOptions &)	PLMD::manyrestraints::UWalls	explicit
warning(const std::string &msg)	PLMD::Action
weightHasDerivatives	PLMD::vesselbase::ActionWithVessel	protected
weightWithDerivatives() const	PLMD::vesselbase::ActionWithVessel	inline
~Action()	PLMD::Action	virtual
~ActionWithInputVessel()	PLMD::vesselbase::ActionWithInputVessel	inlinevirtual
~ActionWithValue()	PLMD::ActionWithValue
~ActionWithVessel()	PLMD::vesselbase::ActionWithVessel