PLMD::generic::Read Member List

This is the complete list of members for PLMD::generic::Read, including all inherited members.

Action(const ActionOptions &)	PLMD::Action	explicit
ActionPilot(const ActionOptions &)	PLMD::ActionPilot	explicit
ActionWithValue(const ActionOptions &ao)	PLMD::ActionWithValue	explicit
activate()	PLMD::Action	virtual
addComponent(const std::string &name)	PLMD::ActionWithValue
addComponentWithDerivatives(const std::string &name)	PLMD::ActionWithValue
addDependency(Action *)	PLMD::Action
addValue()	PLMD::ActionWithValue
addValueWithDerivatives()	PLMD::ActionWithValue
apply()	PLMD::generic::Read	inlinevirtual
calculate()	PLMD::generic::Read	virtual
calculateFromPDB(const PDB &)	PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::Action	virtual
checkFieldsAllowed()	PLMD::ActionWithValue	inlinevirtual
checkNeedsGradients() const	PLMD::Action	inlinevirtual
PLMD::checkNumericalDerivatives() const	PLMD::Action	inlinevirtual
PLMD::ActionWithValue::checkNumericalDerivatives() const	PLMD::ActionWithValue	inlinevirtual
checkRead()	PLMD::Action
checkUpdate() const	PLMD::Action
cite(const std::string &s)	PLMD::Action
clearDependencies()	PLMD::Action
clearDerivatives()	PLMD::ActionWithValue	virtual
clearInputForces()	PLMD::ActionWithValue
clearOptions()	PLMD::Action	virtual
cloned_file	PLMD::generic::Read	private
comm	PLMD::Action
componentIsNotPeriodic(const std::string &name)	PLMD::ActionWithValue
componentIsPeriodic(const std::string &name, const std::string &min, const std::string &max)	PLMD::ActionWithValue
componentsAreNotOptional(Keywords &keys)	PLMD::ActionWithValue	static
copyOutput(const std::string &name) const	PLMD::ActionWithValue
copyOutput(const unsigned &n) const	PLMD::ActionWithValue
deactivate()	PLMD::Action	inlinevirtual
Dependencies typedef	PLMD::Action
doNotCalculateDerivatives() const	PLMD::ActionWithValue	inline
error(const std::string &msg) const	PLMD::Action
exists(const std::string &name) const	PLMD::ActionWithValue
exit(int c=0)	PLMD::Action
fclose(FILE *fp)	PLMD::Action
fflush()	PLMD::Action
filename	PLMD::generic::Read	private
files	PLMD::Action
files_iterator typedef	PLMD::Action
fopen(const char *path, const char *mode)	PLMD::Action
getComponentsList() const	PLMD::ActionWithValue
getComponentsVector() const	PLMD::ActionWithValue
getDependencies() const	PLMD::Action	inline
getDocumentation() const	PLMD::Action	virtual
getExchangeStep() const	PLMD::Action
getFile()	PLMD::generic::Read
getFilename() const	PLMD::generic::Read
getLabel() const	PLMD::Action	inline
getName() const	PLMD::Action	inline
getNumberOfComponents() const	PLMD::ActionWithValue	inline
getNumberOfDerivatives()	PLMD::generic::Read	virtual
getOutputQuantity(const unsigned j) const	PLMD::ActionWithValue	inline
getOutputQuantity(const std::string &name) const	PLMD::ActionWithValue	inline
getPntrToComponent(int i)	PLMD::ActionWithValue	protected
getPntrToComponent(const std::string &name)	PLMD::ActionWithValue	protected
getPntrToValue()	PLMD::ActionWithValue	protected
getRestart() const	PLMD::Action	inline
getStep() const	PLMD::Action
getStride() const	PLMD::ActionPilot	protected
getTime() const	PLMD::Action
getTimeStep() const	PLMD::Action
ifile	PLMD::generic::Read	private
ignore_forces	PLMD::generic::Read	private
ignore_time	PLMD::generic::Read	private
isActive() const	PLMD::Action	inline
isOptionOn(const std::string &s) const	PLMD::Action	inline
keywords	PLMD::Action
lockRequests()	PLMD::Action	inlinevirtual
log	PLMD::Action
multi_sim_comm	PLMD::Action
nlinesPerStep	PLMD::generic::Read	private
noAnalyticalDerivatives(Keywords &keys)	PLMD::ActionWithValue	static
onStep() const	PLMD::ActionPilot
parse(const std::string &key, T &t)	PLMD::Action
parseFlag(const std::string &key, bool &t)	PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)	PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)	PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)	PLMD::Action
plumed	PLMD::Action
prepare()	PLMD::generic::Read	virtual
Read(const ActionOptions &)	PLMD::generic::Read	explicit
readAtomsFromPDB(const PDB &)	PLMD::Action	inlinevirtual
readvals	PLMD::generic::Read	private
registerKeywords(Keywords &keys)	PLMD::generic::Read	static
runFinalJobs()	PLMD::Action	inlinevirtual
setGradientsIfNeeded()	PLMD::ActionWithValue
setNotPeriodic()	PLMD::ActionWithValue
setOption(const std::string &s)	PLMD::Action	virtual
setPeriodic(const std::string &min, const std::string &max)	PLMD::ActionWithValue
setValue(const double &d)	PLMD::ActionWithValue	inlineprotected
setValue(Value *, double)	PLMD::ActionWithValue
turnOnDerivatives()	PLMD::generic::Read	virtual
unlockRequests()	PLMD::Action	inlinevirtual
update()	PLMD::generic::Read	virtual
useCustomisableComponents(Keywords &keys)	PLMD::ActionWithValue	static
useNumericalDerivatives()	PLMD::ActionWithValue	inline
warning(const std::string &msg)	PLMD::Action
~Action()	PLMD::Action	virtual
~ActionWithValue()	PLMD::ActionWithValue
~Read()	PLMD::generic::Read