PLMD::OptimalAlignment Member List

This is the complete list of members for PLMD::OptimalAlignment, including all inherited members.

alignPLMD::OptimalAlignmentprivate
assignAlign(const std::vector< double > &align)PLMD::OptimalAlignment
assignDisplace(const std::vector< double > &displace)PLMD::OptimalAlignment
assignP0(const std::vector< Vector > &p0)PLMD::OptimalAlignment
assignP1(const std::vector< Vector > &p1)PLMD::OptimalAlignment
calculate(bool rmsd, std::vector< Vector > &derivatives)PLMD::OptimalAlignment
derrdp0PLMD::OptimalAlignmentprivate
derrdp1PLMD::OptimalAlignmentprivate
displacePLMD::OptimalAlignmentprivate
fastPLMD::OptimalAlignmentprivate
logPLMD::OptimalAlignmentprivate
mykearsleyPLMD::OptimalAlignmentprivate
OptimalAlignment(const std::vector< double > &align, const std::vector< double > &displace, const std::vector< Vector > &p0, const std::vector< Vector > &p1, Log *&log)PLMD::OptimalAlignment
p0PLMD::OptimalAlignmentprivate
p1PLMD::OptimalAlignmentprivate
weightedAlignment(bool rmsd)PLMD::OptimalAlignment
weightedFindiffTest(bool rmsd)PLMD::OptimalAlignment
~OptimalAlignment()PLMD::OptimalAlignment
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