PLMD::MultiReferenceBase Member List

This is the complete list of members for PLMD::MultiReferenceBase, including all inherited members.

calcDistanceFromConfiguration(const unsigned &ifunc, const std::vector< Vector > &pos, const Pbc &pbc, const std::vector< Value * > &arg, ReferenceValuePack &myder, const bool &squared) const PLMD::MultiReferenceBaseinline
calculateAllDistances(const Pbc &pbc, const std::vector< Value * > &vals, Communicator &comm, Matrix< double > &distances, const bool &squared)PLMD::MultiReferenceBase
clearFrames()PLMD::MultiReferenceBase
clearRestOfData()PLMD::MultiReferenceBaseinlinevirtual
copyFrame(ReferenceConfiguration *frameToCopy)PLMD::MultiReferenceBase
framesPLMD::MultiReferenceBaseprotected
getAtomAndArgumentRequirements(std::vector< AtomNumber > &atoms, std::vector< std::string > &args)PLMD::MultiReferenceBase
getFrame(const unsigned &iframe)PLMD::MultiReferenceBaseinline
getNumberOfReferenceFrames() const PLMD::MultiReferenceBaseinline
getWeight(const unsigned &ifram) const PLMD::MultiReferenceBaseinline
mtypePLMD::MultiReferenceBaseprivate
MultiReferenceBase(const std::string &type, const bool &checksoff)PLMD::MultiReferenceBase
parse(const std::string &key, T &val)PLMD::MultiReferenceBaseprotected
readFrame(PDB &pdb)PLMD::MultiReferenceBase
readRestOfFrame()PLMD::MultiReferenceBaseinlinevirtual
resizeRestOfFrame()PLMD::MultiReferenceBaseinlinevirtual
setWeights(const std::vector< double > &ww)PLMD::MultiReferenceBase
skipchecksPLMD::MultiReferenceBaseprivate
wasSetPLMD::MultiReferenceBaseprivate
~MultiReferenceBase()PLMD::MultiReferenceBasevirtual
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