PLMD::ves::TargetDistribution Member List

This is the complete list of members for PLMD::ves::TargetDistribution, including all inherited members.

Action(const ActionOptions &)PLMD::Actionexplicit
Action(const Action &a)=deletePLMD::Actionprivate
action_pntr_PLMD::ves::TargetDistributionprivate
activate()PLMD::Actionvirtual
activePLMD::Actionprivate
addDependency(Action *)PLMD::Action
afterPLMD::Actionprivate
allow_bias_cutoff_PLMD::ves::TargetDistributionprivate
allowBiasCutoff()PLMD::ves::TargetDistributioninline
apply() overridePLMD::ves::TargetDistributioninlinevirtual
applyTargetDistModiferToGrid(TargetDistModifer *modifer_pntr)PLMD::ves::TargetDistributionprotected
beforeUpdate()PLMD::Actioninlinevirtual
bias_cutoff_active_PLMD::ves::TargetDistributionprivate
bias_grid_pntr_PLMD::ves::TargetDistributionprivate
bias_withoutcutoff_grid_pntr_PLMD::ves::TargetDistributionprivate
biasCutoffActive() constPLMD::ves::TargetDistributioninline
biasGridNeeded() constPLMD::ves::TargetDistributioninline
biasWithoutCutoffGridNeeded() constPLMD::ves::TargetDistributioninline
calculate() overridePLMD::ves::TargetDistributioninlinevirtual
calculateFromPDB(const PDB &)PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::Actionvirtual
calculateStaticDistributionGrid()PLMD::ves::TargetDistributionprivate
castToActionAtomistic() noexceptPLMD::Actioninlinevirtual
castToActionForInterface() noexceptPLMD::Actioninlinevirtual
castToActionShortcut() noexceptPLMD::Actioninlinevirtual
castToActionToGetData() noexceptPLMD::Actioninlinevirtual
castToActionToPutData() noexceptPLMD::Actioninlinevirtual
castToActionWithArguments() noexceptPLMD::Actioninlinevirtual
castToActionWithValue() noexceptPLMD::Actioninlinevirtual
castToActionWithVirtualAtom() noexceptPLMD::Actioninlinevirtual
castToDomainDecomposition() noexceptPLMD::Actioninlinevirtual
castToPbcAction() noexceptPLMD::Actioninlinevirtual
check_nan_inf_PLMD::ves::TargetDistributionprivate
check_nonnegative_PLMD::ves::TargetDistributionprivate
check_normalization_PLMD::ves::TargetDistributionprivate
checkForDependency(Action *)PLMD::Action
checkNanAndInf()PLMD::ves::TargetDistributionprivate
checkNeedsGradients() constPLMD::Actioninlinevirtual
checkNumericalDerivatives() constPLMD::Actioninlinevirtual
checkRead()PLMD::Action
checkUpdate() constPLMD::Action
cite(const std::string &s)PLMD::Action
clearDependencies()PLMD::Action
clearLogTargetDistGrid()PLMD::ves::TargetDistribution
clearOptions()PLMD::Actionvirtual
commPLMD::Action
deactivate()PLMD::Actioninlinevirtual
defaultsPLMD::Actionprivate
Dependencies typedefPLMD::Action
dimension_PLMD::ves::TargetDistributionprivate
doCheckPointPLMD::Actionprivate
doNotAllowBiasCutoff()PLMD::ves::TargetDistributioninline
dynamic_targetdist enum valuePLMD::ves::TargetDistributionprivate
error(const std::string &msg) constPLMD::Action
exit(int c=0)PLMD::Action
fclose(FILE *fp)PLMD::Action
fes_grid_pntr_PLMD::ves::TargetDistributionprivate
fesGridNeeded() constPLMD::ves::TargetDistributioninline
fflush()PLMD::Action
filesPLMD::Action
fopen(const char *path, const char *mode)PLMD::Action
force_normalization_PLMD::ves::TargetDistributionprivate
forcedNormalization() constPLMD::ves::TargetDistributioninline
getBeta() constPLMD::ves::TargetDistributionprotected
getBiasGridPntr() constPLMD::ves::TargetDistributioninlineprotected
getBiasWithoutCutoffGridPntr() constPLMD::ves::TargetDistributioninlineprotected
getCPT() constPLMD::Action
getDefaultString() constPLMD::Actioninline
getDependencies() constPLMD::Actioninline
getDimension() constPLMD::ves::TargetDistributioninline
getExchangeStep() constPLMD::Action
getFesGridPntr() constPLMD::ves::TargetDistributioninlineprotected
getKBoltzmann() constPLMD::Actionprotected
getkBT()PLMD::Action
getKeyword(const std::string &key)PLMD::Action
getLabel() constPLMD::Actioninline
getLogTargetDistGridPntr() constPLMD::ves::TargetDistributioninline
getMarginal(const std::vector< std::string > &)PLMD::ves::TargetDistribution
getMarginalDistributionGrid(Grid *, const std::vector< std::string > &)PLMD::ves::TargetDistributionstatic
getName() constPLMD::Actioninline
getPntrToAction() constPLMD::ves::TargetDistributioninlineprotected
getPntrToVesBias() constPLMD::ves::TargetDistributioninlineprotected
getRestart() constPLMD::Actioninline
getStep() constPLMD::Action
getTargetDistGridPntr() constPLMD::ves::TargetDistributioninline
getTime() constPLMD::Action
getTimeStep() constPLMD::Action
getUnits() constPLMD::Actionprotected
getValue(const std::vector< double > &) const =0PLMD::ves::TargetDistributionpure virtual
grid_args_PLMD::ves::TargetDistributionprivate
integrateGrid(const Grid *)PLMD::ves::TargetDistributionstatic
isActive() constPLMD::Actioninline
isBiasCutoffAllowed() constPLMD::ves::TargetDistributioninline
isDynamic() constPLMD::ves::TargetDistributioninline
isOptionOn(const std::string &s) constPLMD::Actioninline
isStatic() constPLMD::ves::TargetDistributioninline
isTargetDistGridShiftedToZero() constPLMD::ves::TargetDistributioninline
keywordsPLMD::Action
labelPLMD::Actionprivate
linePLMD::Actionprivate
linkAction(Action *)PLMD::ves::TargetDistributionvirtual
linkBiasGrid(Grid *)PLMD::ves::TargetDistributionvirtual
linkBiasWithoutCutoffGrid(Grid *)PLMD::ves::TargetDistributionvirtual
linkFesGrid(Grid *)PLMD::ves::TargetDistributionvirtual
linkVesBias(VesBias *)PLMD::ves::TargetDistributionvirtual
lockRequests()PLMD::Actioninlinevirtual
logPLMD::Action
log_targetdist_grid_pntr_PLMD::ves::TargetDistributionprivate
logTargetDistGrid() constPLMD::ves::TargetDistributioninlineprotected
multi_sim_commPLMD::Action
namePLMD::Actionprivate
needs_bias_grid_PLMD::ves::TargetDistributionprivate
needs_bias_withoutcutoff_grid_PLMD::ves::TargetDistributionprivate
needs_fes_grid_PLMD::ves::TargetDistributionprivate
never_activatePLMD::Actionprivate
normalizeGrid(Grid *)PLMD::ves::TargetDistributionstatic
normalizeTargetDistGrid()PLMD::ves::TargetDistributioninlineprotected
operator=(const Action &a)=deletePLMD::Actionprivate
optionsPLMD::Actionprivate
parse(const std::string &key, T &t)PLMD::Action
parseFlag(const std::string &key, bool &t)PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)PLMD::Action
plumedPLMD::Action
prepare()PLMD::Actionvirtual
readAtomsFromPDB(const PDB &)PLMD::Actioninlinevirtual
readInRestartTargetDistGrid(const std::string &)PLMD::ves::TargetDistribution
registerKeywords(Keywords &)PLMD::ves::TargetDistributionstatic
replica_indexPLMD::Actionprivate
resetStoredTimestep()PLMD::Action
restartPLMD::Actionprivate
runFinalJobs()PLMD::Actioninlinevirtual
setBiasGridNeeded()PLMD::ves::TargetDistributioninlineprotected
setBiasWithoutCutoffGridNeeded()PLMD::ves::TargetDistributioninlineprotected
setDimension(const unsigned int dimension)PLMD::ves::TargetDistribution
setDynamic()PLMD::ves::TargetDistributioninlineprotected
setFesGridNeeded()PLMD::ves::TargetDistributioninlineprotected
setForcedNormalization()PLMD::ves::TargetDistributioninlineprotected
setMinimumOfTargetDistGridToZero()PLMD::ves::TargetDistributionprotected
setOption(const std::string &s)PLMD::Actionvirtual
setStatic()PLMD::ves::TargetDistributioninlineprotected
setupAdditionalGrids(const std::vector< Value * > &, const std::vector< std::string > &, const std::vector< std::string > &, const std::vector< unsigned int > &)PLMD::ves::TargetDistributioninlineprotectedvirtual
setupBiasCutoff()PLMD::ves::TargetDistribution
setupConstantValues(const bool &have_atoms)PLMD::Action
setupGrids(const std::vector< Value * > &, const std::vector< std::string > &, const std::vector< std::string > &, const std::vector< unsigned int > &)PLMD::ves::TargetDistribution
shift_targetdist_to_zero_PLMD::ves::TargetDistributionprivate
static_grid_calculatedPLMD::ves::TargetDistributionprivate
static_targetdist enum valuePLMD::ves::TargetDistributionprivate
targetdist_grid_pntr_PLMD::ves::TargetDistributionprivate
targetdist_modifer_pntrs_PLMD::ves::TargetDistributionprivate
targetDistGrid() constPLMD::ves::TargetDistributioninlineprotected
TargetDistribution(const ActionOptions &)PLMD::ves::TargetDistributionexplicit
TargetDistType enum namePLMD::ves::TargetDistributionprivate
timestepPLMD::Actionprivate
type_PLMD::ves::TargetDistributionprivate
unlockRequests()PLMD::Actioninlinevirtual
unsetForcedNormalization()PLMD::ves::TargetDistributioninlineprotected
update() overridePLMD::ves::TargetDistributioninlinevirtual
update_fromPLMD::Actionprivate
update_untilPLMD::Actionprivate
updateBiasCutoffForTargetDistGrid()PLMD::ves::TargetDistributionprivate
updateGrid()PLMD::ves::TargetDistributioninlineprotectedvirtual
updateLogTargetDistGrid()PLMD::ves::TargetDistributionprotected
updateTargetDist()PLMD::ves::TargetDistribution
usingNaturalUnits() constPLMD::Actionprotected
vesbias_pntr_PLMD::ves::TargetDistributionprivate
warning(const std::string &msg)PLMD::Action
writeInGraph() constPLMD::Actionvirtual
~Action()PLMD::Actionvirtual
~TargetDistribution()PLMD::ves::TargetDistribution
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