PLMD::generic::Read Member List

This is the complete list of members for PLMD::generic::Read, including all inherited members.

Action(const ActionOptions &)	PLMD::Action	explicit
Action(const Action &a)=delete	PLMD::Action	private
ActionPilot(const ActionOptions &)	PLMD::ActionPilot	explicit
ActionWithValue(const ActionOptions &ao)	PLMD::ActionWithValue	explicit
activate()	PLMD::Action	virtual
active	PLMD::Action	private
addComponent(const std::string &name, const std::vector< unsigned > &shape=std::vector< unsigned >())	PLMD::ActionWithValue
addComponentWithDerivatives(const std::string &name, const std::vector< unsigned > &shape=std::vector< unsigned >())	PLMD::ActionWithValue	virtual
addDependency(Action *)	PLMD::Action
addValue(const std::vector< unsigned > &shape=std::vector< unsigned >())	PLMD::ActionWithValue
addValueWithDerivatives(const std::vector< unsigned > &shape=std::vector< unsigned >())	PLMD::ActionWithValue	virtual
after	PLMD::Action	private
apply() override	PLMD::generic::Read	inlinevirtual
beforeUpdate()	PLMD::Action	inlinevirtual
calculate() override	PLMD::generic::Read	virtual
calculateFromPDB(const PDB &)	PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::Action	virtual
calculateOnUpdate()	PLMD::ActionWithValue	virtual
castToActionAtomistic() noexcept	PLMD::Action	inlinevirtual
castToActionForInterface() noexcept	PLMD::Action	inlinevirtual
castToActionShortcut() noexcept	PLMD::Action	inlinevirtual
castToActionToGetData() noexcept	PLMD::Action	inlinevirtual
castToActionToPutData() noexcept	PLMD::Action	inlinevirtual
castToActionWithArguments() noexcept	PLMD::Action	inlinevirtual
PLMD::castToActionWithValue() noexcept	PLMD::Action	inlinevirtual
PLMD::ActionWithValue::castToActionWithValue() noexcept final	PLMD::ActionWithValue	inlinevirtual
castToActionWithVirtualAtom() noexcept	PLMD::Action	inlinevirtual
castToDomainDecomposition() noexcept	PLMD::Action	inlinevirtual
castToPbcAction() noexcept	PLMD::Action	inlinevirtual
checkFieldsAllowed()	PLMD::ActionWithValue	inlinevirtual
checkForDependency(Action *)	PLMD::Action
checkForForces()	PLMD::ActionWithValue	protected
checkNeedsGradients() const	PLMD::Action	inlinevirtual
PLMD::checkNumericalDerivatives() const	PLMD::Action	inlinevirtual
PLMD::ActionWithValue::checkNumericalDerivatives() const override	PLMD::ActionWithValue	inlinevirtual
checkRead()	PLMD::Action
checkUpdate() const	PLMD::Action
cite(const std::string &s)	PLMD::Action
clearDependencies()	PLMD::Action
clearDerivatives(const bool &force=false)	PLMD::ActionWithValue	virtual
clearInputForces(const bool &force=false)	PLMD::ActionWithValue	virtual
clearOptions()	PLMD::Action	virtual
cloned_file	PLMD::generic::Read	private
comm	PLMD::Action
componentIsNotPeriodic(const std::string &name)	PLMD::ActionWithValue
componentIsPeriodic(const std::string &name, const std::string &min, const std::string &max)	PLMD::ActionWithValue
copyOutput(const std::string &name) const	PLMD::ActionWithValue
copyOutput(const unsigned &n) const	PLMD::ActionWithValue
deactivate()	PLMD::Action	inlinevirtual
defaults	PLMD::Action	private
Dependencies typedef	PLMD::Action
doCheckPoint	PLMD::Action	private
doNotCalculateDerivatives() const	PLMD::ActionWithValue	inlinevirtual
error(const std::string &msg) const	PLMD::Action
exists(const std::string &name) const	PLMD::ActionWithValue
exit(int c=0)	PLMD::Action
fclose(FILE *fp)	PLMD::Action
fflush()	PLMD::Action
filename	PLMD::generic::Read	private
files	PLMD::Action
firststep	PLMD::ActionWithValue	private
fopen(const char *path, const char *mode)	PLMD::Action
forcesForApply	PLMD::ActionWithValue	private
getComponent(const std::string &name) const	PLMD::ActionWithValue	private
getComponentsList() const	PLMD::ActionWithValue
getComponentsVector() const	PLMD::ActionWithValue
getConstPntrToComponent(int i) const	PLMD::ActionWithValue	protected
getCPT() const	PLMD::Action
getDefaultString() const	PLMD::Action	inline
getDependencies() const	PLMD::Action	inline
getExchangeStep() const	PLMD::Action
getFile()	PLMD::generic::Read
getFilename() const	PLMD::generic::Read
getForcesToApply() const	PLMD::ActionWithValue	inlineprotected
getKBoltzmann() const	PLMD::Action	protected
getkBT()	PLMD::Action
getKeyword(const std::string &key)	PLMD::Action
getLabel() const	PLMD::Action	inline
getMatrixColumnTitles(std::vector< std::string > &argnames) const	PLMD::ActionWithValue	virtual
getName() const	PLMD::Action	inline
getNumberOfComponents() const	PLMD::ActionWithValue	inline
getNumberOfDerivatives() override	PLMD::generic::Read	virtual
getOutputComponentDescription(const std::string &cname, const Keywords &keys) const override	PLMD::generic::Read	virtual
getOutputQuantity(const unsigned j) const	PLMD::ActionWithValue	inline
getOutputQuantity(const std::string &name) const	PLMD::ActionWithValue	inline
getPntrToComponent(int i)	PLMD::ActionWithValue	protected
getPntrToComponent(const std::string &name)	PLMD::ActionWithValue	protected
getPntrToValue()	PLMD::ActionWithValue	inlineprotected
getRestart() const	PLMD::Action	inline
getStep() const	PLMD::Action
getStride() const	PLMD::ActionPilot
getTime() const	PLMD::Action
getTimeStep() const	PLMD::Action
getUnits() const	PLMD::Action	protected
ifile	PLMD::generic::Read	private
ifile_ptr	PLMD::generic::Read	private
ignore_forces	PLMD::generic::Read	private
ignore_time	PLMD::generic::Read	private
isActive() const	PLMD::Action	inline
isOptionOn(const std::string &s) const	PLMD::Action	inline
keywords	PLMD::Action
label	PLMD::Action	private
line	PLMD::Action	private
lockRequests()	PLMD::Action	inlinevirtual
log	PLMD::Action
multi_sim_comm	PLMD::Action
name	PLMD::Action	private
never_activate	PLMD::Action	private
nlinesPerStep	PLMD::generic::Read	private
noAnalyticalDerivatives(Keywords &keys)	PLMD::ActionWithValue	static
noderiv	PLMD::ActionWithValue	private
numericalDerivatives	PLMD::ActionWithValue	private
onStep() const	PLMD::ActionPilot	virtual
operator=(const Action &a)=delete	PLMD::Action	private
options	PLMD::Action	private
parse(const std::string &key, T &t)	PLMD::Action
parseFlag(const std::string &key, bool &t)	PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)	PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)	PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)	PLMD::Action
plumed	PLMD::Action
prepare() override	PLMD::generic::Read	virtual
Read(const ActionOptions &)	PLMD::generic::Read	explicit
readAtomsFromPDB(const PDB &)	PLMD::Action	inlinevirtual
readvals	PLMD::generic::Read	private
registerKeywords(Keywords &keys)	PLMD::generic::Read	static
replica_index	PLMD::Action	private
resetStoredTimestep()	PLMD::Action
restart	PLMD::Action	private
runFinalJobs()	PLMD::Action	inlinevirtual
setGradientsIfNeeded()	PLMD::ActionWithValue	virtual
setNotPeriodic()	PLMD::ActionWithValue
setOption(const std::string &s)	PLMD::Action	virtual
setPeriodic(const std::string &min, const std::string &max)	PLMD::ActionWithValue
setStride(const int &n)	PLMD::ActionPilot
setupConstantValues(const bool &have_atoms)	PLMD::Action
setValue(const double &d)	PLMD::ActionWithValue	inlineprotected
setValue(Value *, double)	PLMD::ActionWithValue
stride	PLMD::ActionPilot	private
timestep	PLMD::Action	private
turnOnDerivatives() override	PLMD::generic::Read	virtual
unlockRequests()	PLMD::Action	inlinevirtual
update() override	PLMD::generic::Read	virtual
update_from	PLMD::Action	private
update_until	PLMD::Action	private
useCustomisableComponents(Keywords &keys)	PLMD::ActionWithValue	static
useNumericalDerivatives()	PLMD::ActionWithValue	inline
usingNaturalUnits() const	PLMD::Action	protected
valsToForce	PLMD::ActionWithValue	private
values	PLMD::ActionWithValue	private
warning(const std::string &msg)	PLMD::Action
writeInGraph() const	PLMD::Action	virtual
~Action()	PLMD::Action	virtual
~ActionWithValue()	PLMD::ActionWithValue