PLMD::DomainDecomposition Member List

This is the complete list of members for PLMD::DomainDecomposition, including all inherited members.

Action(const ActionOptions &)PLMD::Actionexplicit
Action(const Action &a)=deletePLMD::Actionprivate
ActionForInterface(const ActionOptions &ao)PLMD::ActionForInterfaceexplicit
actionsPLMD::DomainDecompositionprivate
ActionWithValue(const ActionOptions &ao)PLMD::ActionWithValueexplicit
activate()PLMD::Actionvirtual
activePLMD::Actionprivate
addComponent(const std::string &name, const std::vector< unsigned > &shape=std::vector< unsigned >())PLMD::ActionWithValue
addComponentWithDerivatives(const std::string &name, const std::vector< unsigned > &shape=std::vector< unsigned >())PLMD::ActionWithValuevirtual
addDependency(Action *)PLMD::Action
addValue(const std::vector< unsigned > &shape=std::vector< unsigned >())PLMD::ActionWithValue
addValueWithDerivatives(const std::vector< unsigned > &shape=std::vector< unsigned >())PLMD::ActionWithValuevirtual
afterPLMD::Actionprivate
apply() overridePLMD::DomainDecompositionvirtual
asyncSentPLMD::DomainDecompositionprivate
beforeUpdate()PLMD::Actioninlinevirtual
broadcastToDomains(Value *val)PLMD::DomainDecomposition
calculate() overridePLMD::ActionForInterfaceinlinevirtual
calculateFromPDB(const PDB &)PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::Actionvirtual
calculateOnUpdate()PLMD::ActionWithValuevirtual
castToActionAtomistic() noexceptPLMD::Actioninlinevirtual
castToActionForInterface() noexcept finalPLMD::ActionForInterfaceinlinevirtual
castToActionShortcut() noexceptPLMD::Actioninlinevirtual
castToActionToGetData() noexceptPLMD::Actioninlinevirtual
castToActionToPutData() noexceptPLMD::Actioninlinevirtual
castToActionWithArguments() noexceptPLMD::Actioninlinevirtual
castToActionWithValue() noexcept finalPLMD::ActionWithValueinlinevirtual
castToActionWithVirtualAtom() noexceptPLMD::Actioninlinevirtual
castToDomainDecomposition() noexcept finalPLMD::DomainDecompositioninlinevirtual
castToPbcAction() noexceptPLMD::Actioninlinevirtual
checkFieldsAllowed()PLMD::ActionWithValueinlinevirtual
checkForDependency(Action *)PLMD::Action
checkForForces()PLMD::ActionWithValueprotected
checkNeedsGradients() constPLMD::Actioninlinevirtual
checkNumericalDerivatives() const overridePLMD::ActionWithValueinlinevirtual
checkRead()PLMD::Action
checkUpdate() constPLMD::Action
cite(const std::string &s)PLMD::Action
clearDependencies()PLMD::Action
clearDerivatives(const bool &force=false) overridePLMD::ActionForInterfaceinlinevirtual
clearFullList()PLMD::DomainDecomposition
clearInputForces(const bool &force=false)PLMD::ActionWithValuevirtual
clearOptions()PLMD::Actionvirtual
commPLMD::Action
componentIsNotPeriodic(const std::string &name)PLMD::ActionWithValue
componentIsPeriodic(const std::string &name, const std::string &min, const std::string &max)PLMD::ActionWithValue
copyOutput(const std::string &name) constPLMD::ActionWithValue
copyOutput(const unsigned &n) constPLMD::ActionWithValue
createFullList(const TypesafePtr &x)PLMD::DomainDecomposition
ddPLMD::DomainDecompositionprivate
ddStepPLMD::DomainDecompositionprivate
deactivate()PLMD::Actioninlinevirtual
defaultsPLMD::Actionprivate
Dependencies typedefPLMD::Action
doCheckPointPLMD::Actionprivate
DomainDecomposition(const ActionOptions &ao)PLMD::DomainDecompositionexplicit
doNotCalculateDerivatives() constPLMD::ActionWithValueinlinevirtual
error(const std::string &msg) constPLMD::Action
exists(const std::string &name) constPLMD::ActionWithValue
exit(int c=0)PLMD::Action
fclose(FILE *fp)PLMD::Action
fflush()PLMD::Action
filesPLMD::Action
firststepPLMD::ActionForInterfaceprotected
fopen(const char *path, const char *mode)PLMD::Action
forced_uniquePLMD::DomainDecompositionprivate
forcesForApplyPLMD::ActionWithValueprivate
fullListPLMD::DomainDecompositionprivate
g2lPLMD::DomainDecompositionprivate
gatindexPLMD::DomainDecompositionprivate
getAllActiveAtoms(std::vector< AtomNumber > &u)PLMD::DomainDecompositionprivate
getComponent(const std::string &name) constPLMD::ActionWithValueprivate
getComponentsList() constPLMD::ActionWithValue
getComponentsVector() constPLMD::ActionWithValue
getConstPntrToComponent(int i) constPLMD::ActionWithValueprotected
getCPT() constPLMD::Action
getDdStep() constPLMD::DomainDecomposition
getDefaultString() constPLMD::Actioninline
getDependencies() constPLMD::Actioninline
getExchangeStep() constPLMD::Action
getForcesToApply() constPLMD::ActionWithValueinlineprotected
getFullList(const TypesafePtr &x)PLMD::DomainDecomposition
getGatindex() constPLMD::DomainDecomposition
getKBoltzmann() constPLMD::Actionprotected
getkBT()PLMD::Action
getKeyword(const std::string &key)PLMD::Action
getLabel() constPLMD::Actioninline
getMatrixColumnTitles(std::vector< std::string > &argnames) constPLMD::ActionWithValuevirtual
getName() constPLMD::Actioninline
getNumberOfAtoms() constPLMD::DomainDecomposition
getNumberOfComponents() constPLMD::ActionWithValueinline
getNumberOfDerivatives() overridePLMD::ActionForInterfaceinlinevirtual
getNumberOfForcesToRescale() const overridePLMD::DomainDecompositionvirtual
getOutputComponentDescription(const std::string &cname, const Keywords &keys) constPLMD::ActionWithValuevirtual
getOutputQuantity(const unsigned j) constPLMD::ActionWithValueinline
getOutputQuantity(const std::string &name) constPLMD::ActionWithValueinline
getPntrToComponent(int i)PLMD::ActionWithValueprotected
getPntrToComponent(const std::string &name)PLMD::ActionWithValueprotected
getPntrToValue()PLMD::ActionWithValueinlineprotected
getRestart() constPLMD::Actioninline
getRole() constPLMD::ActionForInterface
getStep() constPLMD::Action
getTime() constPLMD::Action
getTimeStep() constPLMD::Action
getUnits() constPLMD::Actionprotected
hasBeenSet() constPLMD::ActionForInterfaceinline
inputsPLMD::DomainDecompositionprivate
isActive() constPLMD::Actioninline
isOptionOn(const std::string &s) constPLMD::Actioninline
keywordsPLMD::Action
labelPLMD::Actionprivate
linePLMD::Actionprivate
lockRequests()PLMD::Actioninlinevirtual
logPLMD::Action
multi_sim_commPLMD::Action
namePLMD::Actionprivate
never_activatePLMD::Actionprivate
noAnalyticalDerivatives(Keywords &keys)PLMD::ActionWithValuestatic
noderivPLMD::ActionWithValueprivate
numericalDerivativesPLMD::ActionWithValueprivate
onStep() const overridePLMD::DomainDecompositioninlinevirtual
operator=(const Action &a)=deletePLMD::Actionprivate
optionsPLMD::Actionprivate
parse(const std::string &key, T &t)PLMD::Action
parseFlag(const std::string &key, bool &t)PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)PLMD::Action
plumedPLMD::Action
prepare()PLMD::Actionvirtual
readAtomsFromPDB(const PDB &)PLMD::Actioninlinevirtual
readBinary(std::istream &i) overridePLMD::DomainDecompositionvirtual
registerKeywords(Keywords &keys)PLMD::DomainDecompositionstatic
replica_indexPLMD::Actionprivate
reset() overridePLMD::DomainDecompositionvirtual
resetForStepStart() overridePLMD::DomainDecompositionvirtual
resetStoredTimestep()PLMD::Action
restartPLMD::Actionprivate
rolePLMD::ActionForInterfaceprotected
runFinalJobs()PLMD::Actioninlinevirtual
Set_comm(Communicator &comm) overridePLMD::DomainDecompositionvirtual
setAtomsContiguous(int start)PLMD::DomainDecomposition
setAtomsGatindex(const TypesafePtr &g, bool fortran)PLMD::DomainDecomposition
setAtomsNlocal(int n)PLMD::DomainDecomposition
setForcePointer(const std::string &name, const TypesafePtr &) overridePLMD::DomainDecompositionvirtual
setGradientsIfNeeded() overridePLMD::ActionForInterfaceinlinevirtual
setNotPeriodic()PLMD::ActionWithValue
setOption(const std::string &s)PLMD::Actionvirtual
setPeriodic(const std::string &min, const std::string &max)PLMD::ActionWithValue
setStart(const std::string &name, const unsigned &sss) overridePLMD::DomainDecompositionvirtual
setStride(const std::string &name, const unsigned &sss) overridePLMD::DomainDecompositionvirtual
setupConstantValues(const bool &have_atoms)PLMD::Action
setValue(const double &d)PLMD::ActionWithValueinlineprotected
setValue(Value *, double)PLMD::ActionWithValue
setValuePointer(const std::string &name, const TypesafePtr &) overridePLMD::DomainDecompositionvirtual
share(const std::vector< AtomNumber > &unique)PLMD::DomainDecompositionprivate
share() overridePLMD::DomainDecompositionvirtual
shareAll() overridePLMD::DomainDecompositionvirtual
shuffledAtomsPLMD::DomainDecompositionprivate
sumOverDomains(Value *val)PLMD::DomainDecomposition
timestepPLMD::Actionprivate
turnOnDerivatives()PLMD::ActionWithValuevirtual
uniq_indexPLMD::DomainDecompositionprivate
uniquePLMD::DomainDecompositionprivate
unique_serialPLMD::DomainDecompositionprivate
unlockRequests()PLMD::Actioninlinevirtual
update()PLMD::Actioninlinevirtual
update_fromPLMD::Actionprivate
update_untilPLMD::Actionprivate
useCustomisableComponents(Keywords &keys)PLMD::ActionWithValuestatic
useNumericalDerivatives()PLMD::ActionWithValueinline
usingNaturalUnits() constPLMD::Actionprotected
valsToForcePLMD::ActionWithValueprivate
valuesPLMD::ActionWithValueprivate
wait() overridePLMD::DomainDecompositionvirtual
warning(const std::string &msg)PLMD::Action
wasscaledPLMD::ActionForInterfaceprotected
wassetPLMD::ActionForInterfaceprotected
writeBinary(std::ostream &o) overridePLMD::DomainDecompositionvirtual
writeInGraph() constPLMD::Actionvirtual
~Action()PLMD::Actionvirtual
~ActionWithValue()PLMD::ActionWithValue
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