Action(const ActionOptions &) | PLMD::Action | explicit |
Action(const Action &a)=delete | PLMD::Action | private |
ActionPilot(const ActionOptions &) | PLMD::ActionPilot | explicit |
ActionToGetData(const ActionOptions &ao) | PLMD::ActionToGetData | explicit |
ActionWithArguments(const ActionOptions &) | PLMD::ActionWithArguments | explicit |
activate() | PLMD::Action | virtual |
active | PLMD::Action | private |
addDependency(Action *) | PLMD::Action | |
addForcesOnArguments(const unsigned &argstart, const std::vector< double > &forces, unsigned &ind, const std::string &c) | PLMD::ActionWithArguments | |
after | PLMD::Action | private |
apply() | PLMD::ActionToGetData | inlinevirtual |
arguments | PLMD::ActionWithArguments | private |
beforeUpdate() | PLMD::Action | inlinevirtual |
bringBackInPbc(int i, double d1) const | PLMD::ActionWithArguments | inline |
calculate() | PLMD::ActionToGetData | virtual |
calculateConstantValues(const bool &have_atoms) | PLMD::ActionWithArguments | virtual |
calculateFromPDB(const PDB &) | PLMD::Action | |
PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL) | PLMD::Action | virtual |
PLMD::ActionWithArguments::calculateNumericalDerivatives(ActionWithValue *a=NULL) override | PLMD::ActionWithArguments | virtual |
castToActionAtomistic() noexcept | PLMD::Action | inlinevirtual |
castToActionForInterface() noexcept | PLMD::Action | inlinevirtual |
castToActionShortcut() noexcept | PLMD::Action | inlinevirtual |
castToActionToGetData() noexcept final | PLMD::ActionToGetData | inlinevirtual |
castToActionToPutData() noexcept | PLMD::Action | inlinevirtual |
PLMD::castToActionWithArguments() noexcept | PLMD::Action | inlinevirtual |
PLMD::ActionWithArguments::castToActionWithArguments() noexcept final | PLMD::ActionWithArguments | inlinevirtual |
castToActionWithValue() noexcept | PLMD::Action | inlinevirtual |
castToActionWithVirtualAtom() noexcept | PLMD::Action | inlinevirtual |
castToDomainDecomposition() noexcept | PLMD::Action | inlinevirtual |
castToPbcAction() noexcept | PLMD::Action | inlinevirtual |
checkForDependency(Action *) | PLMD::Action | |
checkNeedsGradients() const | PLMD::Action | inlinevirtual |
checkNumericalDerivatives() const | PLMD::Action | inlinevirtual |
checkRead() | PLMD::Action | |
checkUpdate() const | PLMD::Action | |
cite(const std::string &s) | PLMD::Action | |
clearDependencies() | PLMD::Action | |
clearOptions() | PLMD::Action | virtual |
comm | PLMD::Action | |
data | PLMD::ActionToGetData | private |
deactivate() | PLMD::Action | inlinevirtual |
defaults | PLMD::Action | private |
Dependencies typedef | PLMD::Action | |
deriv enum value | PLMD::ActionToGetData | private |
difference(int, double, double) const | PLMD::ActionWithArguments | inline |
doCheckPoint | PLMD::Action | private |
error(const std::string &msg) const | PLMD::Action | |
exit(int c=0) | PLMD::Action | |
expandArgKeywordInPDB(const PDB &pdb) | PLMD::ActionWithArguments | protected |
fclose(FILE *fp) | PLMD::Action | |
fflush() | PLMD::Action | |
files | PLMD::Action | |
fopen(const char *path, const char *mode) | PLMD::Action | |
force enum value | PLMD::ActionToGetData | private |
get_rank(const TypesafePtr &rank) | PLMD::ActionToGetData | |
get_shape(const TypesafePtr &dims) | PLMD::ActionToGetData | |
getArgument(const unsigned n) const | PLMD::ActionWithArguments | inline |
getArguments() const | PLMD::ActionWithArguments | inlinevirtual |
getCPT() const | PLMD::Action | |
getDefaultString() const | PLMD::Action | inline |
getDependencies() const | PLMD::Action | inline |
getExchangeStep() const | PLMD::Action | |
getKBoltzmann() const | PLMD::Action | protected |
getkBT() | PLMD::Action | |
getKeyword(const std::string &key) | PLMD::Action | |
getLabel() const | PLMD::Action | inline |
getName() const | PLMD::Action | inline |
getNumberOfArguments() const | PLMD::ActionWithArguments | inlinevirtual |
getPntrToArgument(const unsigned n) const | PLMD::ActionWithArguments | inline |
getProjection(unsigned i, unsigned j) const | PLMD::ActionWithArguments | |
getRestart() const | PLMD::Action | inline |
getStep() const | PLMD::Action | |
getStride() const | PLMD::ActionPilot | |
getTime() const | PLMD::Action | |
getTimeStep() const | PLMD::Action | |
getUnits() const | PLMD::Action | protected |
gtype | PLMD::ActionToGetData | private |
interpretArgumentList(const std::vector< std::string > &c, const ActionSet &as, Action *action, std::vector< Value * > &arg) | PLMD::ActionWithArguments | static |
isActive() const | PLMD::Action | inline |
isOptionOn(const std::string &s) const | PLMD::Action | inline |
keywords | PLMD::Action | |
label | PLMD::Action | private |
line | PLMD::Action | private |
lockRequestArguments | PLMD::ActionWithArguments | private |
PLMD::lockRequests() | PLMD::Action | inlinevirtual |
PLMD::ActionWithArguments::lockRequests() override | PLMD::ActionWithArguments | inlinevirtual |
log | PLMD::Action | |
multi_sim_comm | PLMD::Action | |
mydata | PLMD::ActionToGetData | private |
name | PLMD::Action | private |
never_activate | PLMD::Action | private |
onStep() const | PLMD::ActionPilot | virtual |
operator=(const Action &a)=delete | PLMD::Action | private |
options | PLMD::Action | private |
parse(const std::string &key, T &t) | PLMD::Action | |
parseArgumentList(const std::string &key, std::vector< Value * > &args) | PLMD::ActionWithArguments | |
parseArgumentList(const std::string &key, int i, std::vector< Value * > &args) | PLMD::ActionWithArguments | |
parseFlag(const std::string &key, bool &t) | PLMD::Action | |
parseNumbered(const std::string &key, const int no, T &t) | PLMD::Action | |
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t) | PLMD::Action | |
parseVector(const std::string &key, std::vector< T > &t) | PLMD::Action | |
plumed | PLMD::Action | |
prepare() | PLMD::Action | virtual |
readAtomsFromPDB(const PDB &) | PLMD::Action | inlinevirtual |
registerKeywords(Keywords &keys) | PLMD::ActionToGetData | static |
replica_index | PLMD::Action | private |
requestArguments(const std::vector< Value * > &arg) | PLMD::ActionWithArguments | |
requestExtraDependencies(const std::vector< Value * > &extra) | PLMD::ActionWithArguments | |
resetStoredTimestep() | PLMD::Action | |
restart | PLMD::Action | private |
runFinalJobs() | PLMD::Action | inlinevirtual |
set_memory(const TypesafePtr &val) | PLMD::ActionToGetData | |
setGradients(Value *myval, unsigned &start) const | PLMD::ActionWithArguments | |
setOption(const std::string &s) | PLMD::Action | virtual |
setStride(const int &n) | PLMD::ActionPilot | |
setupConstantValues(const bool &have_atoms) | PLMD::Action | |
stride | PLMD::ActionPilot | private |
timestep | PLMD::Action | private |
PLMD::unlockRequests() | PLMD::Action | inlinevirtual |
PLMD::ActionWithArguments::unlockRequests() override | PLMD::ActionWithArguments | inlinevirtual |
update() | PLMD::Action | inlinevirtual |
update_from | PLMD::Action | private |
update_until | PLMD::Action | private |
usingNaturalUnits() const | PLMD::Action | protected |
val enum value | PLMD::ActionToGetData | private |
warning(const std::string &msg) | PLMD::Action | |
writeInGraph() const | PLMD::Action | virtual |
~Action() | PLMD::Action | virtual |
~ActionWithArguments() | PLMD::ActionWithArguments | inlinevirtual |