PLMD::bias::ReweightBias Member List

This is the complete list of members for PLMD::bias::ReweightBias, including all inherited members.

Action(const ActionOptions &)	PLMD::Action	explicit
Action(const Action &a)=delete	PLMD::Action	private
ActionWithArguments(const ActionOptions &)	PLMD::ActionWithArguments	explicit
ActionWithValue(const ActionOptions &ao)	PLMD::ActionWithValue	explicit
activate()	PLMD::Action	virtual
active	PLMD::Action	private
addComponent(const std::string &name)	PLMD::ActionWithValue
addComponentWithDerivatives(const std::string &name)	PLMD::ActionWithValue
addDependency(Action *)	PLMD::Action
addForcesOnArguments(const std::vector< double > &forces)	PLMD::ActionWithArguments
addValue()	PLMD::ActionWithValue
addValueWithDerivatives()	PLMD::ActionWithValue
after	PLMD::Action	private
apply() override	PLMD::bias::ReweightBase	inlinevirtual
arguments	PLMD::ActionWithArguments	private
beforeUpdate()	PLMD::Action	inlinevirtual
bringBackInPbc(int i, double d1) const	PLMD::ActionWithArguments	inline
buildsWeightStore() const	PLMD::bias::ReweightBase	inlinevirtual
calculate() override	PLMD::bias::ReweightBase	virtual
calculateFromPDB(const PDB &)	PLMD::Action
PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::Action	virtual
PLMD::ActionWithArguments::calculateNumericalDerivatives(ActionWithValue *a=NULL) override	PLMD::ActionWithArguments	virtual
calculateWeights(const unsigned &nframes)	PLMD::bias::ReweightBase	inlinevirtual
checkFieldsAllowed()	PLMD::ActionWithValue	inlinevirtual
checkNeedsGradients() const	PLMD::Action	inlinevirtual
checkNumericalDerivatives() const override	PLMD::ActionWithValue	inlinevirtual
checkRead()	PLMD::Action
checkUpdate() const	PLMD::Action
cite(const std::string &s)	PLMD::Action
clearData()	PLMD::bias::ReweightBase	inlinevirtual
clearDependencies()	PLMD::Action
clearDerivatives()	PLMD::ActionWithValue	virtual
clearInputForces()	PLMD::ActionWithValue
clearOptions()	PLMD::Action	virtual
comm	PLMD::Action
componentIsNotPeriodic(const std::string &name)	PLMD::ActionWithValue
componentIsPeriodic(const std::string &name, const std::string &min, const std::string &max)	PLMD::ActionWithValue
componentsAreNotOptional(Keywords &keys)	PLMD::ActionWithValue	static
copyOutput(const std::string &name) const	PLMD::ActionWithValue
copyOutput(const unsigned &n) const	PLMD::ActionWithValue
deactivate()	PLMD::Action	inlinevirtual
defaults	PLMD::Action	private
Dependencies typedef	PLMD::Action
difference(int, double, double) const	PLMD::ActionWithArguments	inline
doCheckPoint	PLMD::Action	private
doNotCalculateDerivatives() const	PLMD::ActionWithValue	inlinevirtual
error(const std::string &msg) const	PLMD::Action
exists(const std::string &name) const	PLMD::ActionWithValue
exit(int c=0)	PLMD::Action
expandArgKeywordInPDB(const PDB &pdb)	PLMD::ActionWithArguments	protected
fclose(FILE *fp)	PLMD::Action
fflush()	PLMD::Action
files	PLMD::Action
fopen(const char *path, const char *mode)	PLMD::Action
getArgument(const unsigned n) const	PLMD::ActionWithArguments	inline
getArguments() const	PLMD::ActionWithArguments	inlinevirtual
getComponent(const std::string &name) const	PLMD::ActionWithValue	private
getComponentsList() const	PLMD::ActionWithValue
getComponentsVector() const	PLMD::ActionWithValue
getCPT() const	PLMD::Action
getDefaultString() const	PLMD::Action	inline
getDependencies() const	PLMD::Action	inline
getExchangeStep() const	PLMD::Action
getKeyword(const std::string &key)	PLMD::Action
getLabel() const	PLMD::Action	inline
getLogWeight() override	PLMD::bias::ReweightBias	virtual
getName() const	PLMD::Action	inline
getNumberOfArguments() const	PLMD::ActionWithArguments	inlinevirtual
getNumberOfComponents() const	PLMD::ActionWithValue	inline
getNumberOfDerivatives() override	PLMD::bias::ReweightBase	inlinevirtual
getOutputQuantity(const unsigned j) const	PLMD::ActionWithValue	inline
getOutputQuantity(const std::string &name) const	PLMD::ActionWithValue	inline
getPntrToArgument(const unsigned n)	PLMD::ActionWithArguments	inline
getPntrToComponent(int i)	PLMD::ActionWithValue	protected
getPntrToComponent(const std::string &name)	PLMD::ActionWithValue	protected
getPntrToValue()	PLMD::ActionWithValue	protected
getProjection(unsigned i, unsigned j) const	PLMD::ActionWithArguments
getRestart() const	PLMD::Action	inline
getStep() const	PLMD::Action
getTime() const	PLMD::Action
getTimeStep() const	PLMD::Action
getWeight(const unsigned &iweight) const	PLMD::bias::ReweightBase	inlinevirtual
interpretArgumentList(const std::vector< std::string > &c, std::vector< Value * > &arg)	PLMD::ActionWithArguments
isActive() const	PLMD::Action	inline
isOptionOn(const std::string &s) const	PLMD::Action	inline
keywords	PLMD::Action
label	PLMD::Action	private
line	PLMD::Action	private
lockRequestArguments	PLMD::ActionWithArguments	private
PLMD::lockRequests()	PLMD::Action	inlinevirtual
PLMD::ActionWithArguments::lockRequests() override	PLMD::ActionWithArguments	inlinevirtual
log	PLMD::Action
multi_sim_comm	PLMD::Action
name	PLMD::Action	private
noAnalyticalDerivatives(Keywords &keys)	PLMD::ActionWithValue	static
noderiv	PLMD::ActionWithValue	private
numericalDerivatives	PLMD::ActionWithValue	private
operator=(const Action &a)=delete	PLMD::Action	private
options	PLMD::Action	private
parse(const std::string &key, T &t)	PLMD::Action
parseArgumentList(const std::string &key, std::vector< Value * > &args)	PLMD::ActionWithArguments
parseArgumentList(const std::string &key, int i, std::vector< Value * > &args)	PLMD::ActionWithArguments
parseFlag(const std::string &key, bool &t)	PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)	PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)	PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)	PLMD::Action
plumed	PLMD::Action
prepare()	PLMD::Action	virtual
readAtomsFromPDB(const PDB &)	PLMD::Action	inlinevirtual
registerKeywords(Keywords &)	PLMD::bias::ReweightBias	static
replica_index	PLMD::Action	private
requestArguments(const std::vector< Value * > &arg)	PLMD::ActionWithArguments
requestExtraDependencies(const std::vector< Value * > &extra)	PLMD::ActionWithArguments
restart	PLMD::Action	private
ReweightBase(const ActionOptions &ao)	PLMD::bias::ReweightBase	explicit
ReweightBias(const ActionOptions &ao)	PLMD::bias::ReweightBias	explicit
runFinalJobs()	PLMD::Action	inlinevirtual
setGradientsIfNeeded()	PLMD::ActionWithValue
setNotPeriodic()	PLMD::ActionWithValue
setOption(const std::string &s)	PLMD::Action	virtual
setPeriodic(const std::string &min, const std::string &max)	PLMD::ActionWithValue
setValue(const double &d)	PLMD::ActionWithValue	inlineprotected
setValue(Value *, double)	PLMD::ActionWithValue
simtemp	PLMD::bias::ReweightBase	protected
turnOnDerivatives()	PLMD::ActionWithValue	virtual
PLMD::unlockRequests()	PLMD::Action	inlinevirtual
PLMD::ActionWithArguments::unlockRequests() override	PLMD::ActionWithArguments	inlinevirtual
update()	PLMD::Action	inlinevirtual
update_from	PLMD::Action	private
update_until	PLMD::Action	private
useCustomisableComponents(Keywords &keys)	PLMD::ActionWithValue	static
useNumericalDerivatives()	PLMD::ActionWithValue	inline
values	PLMD::ActionWithValue	private
warning(const std::string &msg)	PLMD::Action
~Action()	PLMD::Action	virtual
~ActionWithArguments()	PLMD::ActionWithArguments	inlinevirtual
~ActionWithValue()	PLMD::ActionWithValue