Here is a list of all class members with links to the classes they belong to:
- w -
- w0_
: PLMD::isdb::Rescale
- wait()
: PLMD::Atoms
, PLMD::Communicator::Request
- waitData()
: PLMD::PlumedMain
- walker_rank_
: PLMD::opes::OPESexpanded
, PLMD::opes::OPESmetad< mode >
- walkers_mpi_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- warning()
: PLMD::Action
- wascleared
: PLMD::vesselbase::AveragingVessel
- wasforced
: PLMD::gridtools::GridVessel
- wasForced()
: PLMD::gridtools::GridVessel
- wasreset()
: PLMD::vesselbase::AveragingVessel
- watch
: PLMD::Stopwatch::Handler
- watches
: PLMD::Stopwatch
- wave
: PLMD::molfile::molfile_qm_timestep_t
- wave_coeffs
: PLMD::molfile::molfile_qm_wavefunction_t
- wavef_size
: PLMD::molfile::molfile_qm_metadata_t
, PLMD::molfile::molfile_qm_timestep_metadata
- waveletGrid_
: PLMD::ves::BF_Wavelets
- wavenumbers
: PLMD::molfile::molfile_qm_hessian_t
- weight
: PLMD::colvar::ContactMap
, PLMD::logmfd::LogMFD
- weight_mass
: PLMD::vatom::Center
- weight_vals
: PLMD::analysis::ReadAnalysisFrames
- weightHasDerivatives
: PLMD::vesselbase::ActionWithVessel
, PLMD::vesselbase::StoreDataVessel
- weights
: PLMD::analysis::ReadAnalysisFrames
, PLMD::analysis::ReadDissimilarityMatrix
, PLMD::dimred::SketchMapRead
, PLMD::function::annfunc::ANN
, PLMD::generic::FitToTemplate
, PLMD::gridtools::ActionWithGrid
, PLMD::mapping::Mapping
, PLMD::MultiDomainRMSD
, PLMD::ReferenceArguments
, PLMD::vatom::Center
, PLMD::vesselbase::ActionWithAveraging
- weights_
: PLMD::ves::TD_ExponentiallyModifiedGaussian
, PLMD::ves::TD_Gaussian
, PLMD::ves::TD_GeneralizedNormal
, PLMD::ves::TD_LinearCombination
, PLMD::ves::TD_VonMises
- weights_calculated
: PLMD::analysis::ReadAnalysisFrames
- weightsCalculated
: PLMD::bias::ReweightWham
- weightWithDerivatives()
: PLMD::vesselbase::ActionWithVessel
- welltemp_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- WellTemperedModifer()
: PLMD::ves::WellTemperedModifer
- wfile
: PLMD::analysis::ReadDissimilarityMatrix
- wgridstride_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- wham_pointer
: PLMD::analysis::ReadAnalysisFrames
- WhamHistogram()
: PLMD::analysis::WhamHistogram
- WhamWeights()
: PLMD::analysis::WhamWeights
- what()
: PLMD::Exception
, PLMD::lepton::Exception
, PLMD::Plumed::Exception
, PLMD::Plumed::LeptonException
, PLMD::Plumed::NothrowHandler
, plumed_error
- what_buffer
: plumed_error
- which_cluster
: PLMD::adjmat::ClusteringBase
, PLMD::adjmat::OutputCluster
- Whitespace
: PLMD::lepton::ParseToken
- WholeMolecules()
: PLMD::generic::WholeMolecules
- width
: PLMD::drr::UIestimator::n_matrix
, PLMD::drr::UIestimator::n_vector< T >
, PLMD::drr::UIestimator::UIestimator
, PLMD::HistogramBead
, PLMD::KernelFunctions
- work
: PLMD::bias::MaxEnt
, PLMD::bias::MovingRestraint
, PLMD::logmfd::LogMFD
, PLMD::PlumedMain
- work_
: PLMD::bias::MetaD
, PLMD::opes::OPESexpanded
, PLMD::opes::OPESmetad< mode >
, PLMD::ves::VesDeltaF
- workspace
: PLMD::lepton::CompiledExpression
- WrapAround()
: PLMD::generic::WrapAround
- write_1D_pmf()
: PLMD::drr::UIestimator::UIestimator
- write_angles
: PLMD::molfile::molfile_plugin_t
- write_bonds
: PLMD::molfile::molfile_plugin_t
- write_files()
: PLMD::drr::UIestimator::UIestimator
- write_final_positions()
: PLMD::cltools::SimpleMD
- write_model_overlap()
: PLMD::isdb::EMMI
- write_positions()
: PLMD::cltools::SimpleMD
- write_positions_first
: PLMD::cltools::SimpleMD
- write_statistics()
: PLMD::cltools::SimpleMD
- write_statistics_first
: PLMD::cltools::SimpleMD
- write_statistics_fp
: PLMD::cltools::SimpleMD
- write_statistics_last_time_reopened
: PLMD::cltools::SimpleMD
- write_stride_
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- write_structure
: PLMD::molfile::molfile_plugin_t
- write_timestep
: PLMD::molfile::molfile_plugin_t
- write_volumetric_data
: PLMD::molfile::molfile_plugin_t
- write_volumetric_data_ex
: PLMD::molfile::molfile_plugin_t
- writeBasisFunctionsToFile()
: PLMD::ves::BasisFunctions
- writeBiasGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeBiasOutputFiles()
: PLMD::ves::Optimizer
- writeBiasToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeBiasWithoutCutoffGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeBinary()
: PLMD::Atoms
- writeCoeffsInfoToFile()
: PLMD::ves::CoeffsBase
- writeCubeFile()
: PLMD::GridBase
- writeDataDiagonalToFile()
: PLMD::ves::CoeffsMatrix
- writeDataFullToFile()
: PLMD::ves::CoeffsMatrix
- writeDataToFile()
: PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- writeFesGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeFesOutputFiles()
: PLMD::ves::Optimizer
- writeFesProjGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeFesProjOutputFiles()
: PLMD::ves::Optimizer
- writeFesProjToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeFesToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeGaussian()
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- writehead()
: PLMD::drr::UIestimator::UIestimator
- writeHeader()
: PLMD::GridBase
- writeHeaderToFile()
: PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- writeIterationCounterAndTimeToFile()
: PLMD::ves::CoeffsBase
- WriteLagrangians()
: PLMD::bias::MaxEnt
- writeLogTargetDistGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeMatrixInfoToFile()
: PLMD::ves::CoeffsMatrix
- writeOutObservable()
: PLMD::fisst::FISST
- writeOutputFiles()
: PLMD::ves::Optimizer
- writeOutRestart()
: PLMD::eds::EDS
, PLMD::fisst::FISST
- WriteStateFull()
: PLMD::Random
- writeStatus()
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- writeTargetDistGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeTargetDistOutputFiles()
: PLMD::ves::Optimizer
- writeTargetDistProjGridToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeTargetDistProjOutputFiles()
: PLMD::ves::Optimizer
- writeTargetDistProjToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeTargetDistributionToFile()
: PLMD::ves::LinearBasisSetExpansion
- writeTargetDistToFile()
: PLMD::ves::VesBias
, PLMD::ves::VesLinearExpansion
- writeTimeInfoToFile()
: PLMD::ves::CoeffsBase
- writeToFile()
: PLMD::Grid
, PLMD::GridBase
, PLMD::SparseGrid
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- written
: PLMD::drr::UIestimator::UIestimator
- written_1D
: PLMD::drr::UIestimator::UIestimator
- wStateStride_
: PLMD::opes::OPESexpanded
, PLMD::opes::OPESmetad< mode >
- wstride
: PLMD::mapping::AdaptivePath
- wsum
: PLMD::mapping::AdaptivePath
- wsum_
: PLMD::eds::EDS
- ww
: PLMD::analysis::Histogram