- t -
- t
: PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Const_row
, PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Row
, PLMD::molfile::trx_hdr
- tab_exp_
: PLMD::isdb::EMMI
- tag
: PLMD::lepton::ExpressionTreeNode
- TAMD
: PLMD::logmfd::LogMFD
- target
: PLMD::function::Target
, PLMD::lepton::CompiledExpression
, PLMD::multicolvar::AlphaBeta
, PLMD::TargetDist
- target_coupling_
: PLMD::eds::EDS
- targetdist_averages_filename_
: PLMD::ves::VesBias
- targetdist_averages_output_fmt_
: PLMD::ves::Optimizer
- targetdist_averages_pntr_
: PLMD::ves::LinearBasisSetExpansion
- targetdist_averages_pntrs_
: PLMD::ves::Optimizer
, PLMD::ves::VesBias
- targetdist_averages_wstride_
: PLMD::ves::Optimizer
- targetdist_averagesOFiles_
: PLMD::ves::Optimizer
- targetdist_file_fmt_
: PLMD::ves::VesBias
- targetdist_filename_
: PLMD::ves::VesBias
- targetdist_grid_label_
: PLMD::ves::LinearBasisSetExpansion
- targetdist_grid_pntr_
: PLMD::ves::LinearBasisSetExpansion
, PLMD::ves::TargetDistribution
- targetdist_modifer_pntrs_
: PLMD::ves::TargetDistribution
- targetdist_output_active_
: PLMD::ves::Optimizer
- targetdist_output_stride_
: PLMD::ves::Optimizer
- targetdist_pntr_
: PLMD::ves::LinearBasisSetExpansion
- targetdist_pntrs_
: PLMD::ves::VesBias
- targetdist_proj_output_active_
: PLMD::ves::Optimizer
- targetdist_proj_output_stride_
: PLMD::ves::Optimizer
- targetdist_restart_file_fmt_
: PLMD::ves::VesBias
- targetfilename_
: PLMD::bias::MetaD
- TargetGrid_
: PLMD::bias::MetaD
- targets
: PLMD::DRMSD
- taskFlags
: PLMD::vesselbase::ActionWithVessel
- tau
: PLMD::bias::ExtendedLagrangian
, PLMD::bias::MaxEnt
- td
: PLMD::xdrfile::t_trnheader
- temp
: PLMD::bias::ABMD
, PLMD::drr::UIestimator::n_matrix
, PLMD::drr::UIestimator::n_vector< T >
- temperature
: PLMD::colvar::Dimer
, PLMD::drr::UIestimator::UIestimator
- tempering_names_
: PLMD::bias::MetaD
- tend
: PLMD::bias::MaxEnt
- test
: PLMD::piv::PIV
- text
: PLMD::lepton::ParseToken
- tf
: PLMD::xdrfile::t_trnheader
- tg_counter_
: PLMD::ves::VesDeltaF
- tg_d2V_dAlpha2_
: PLMD::ves::VesDeltaF
- tg_dV_dAlpha_
: PLMD::ves::VesDeltaF
- tg_stride_
: PLMD::ves::VesDeltaF
- thematrix
: PLMD::adjmat::Sprint
- thermostat
: PLMD::logmfd::LogMFD
- threecells
: PLMD::multicolvar::MultiColvarBase
- thresh
: PLMD::bias::ReweightWham
- threshold
: PLMD::bias::MetaD::TemperingSpecs
- threshold2_
: PLMD::opes::OPESmetad< mode >
- threshold_
: PLMD::fisst::FISST
, PLMD::ves::TD_Multicanonical
, PLMD::ves::TD_MultithermalMultibaric
- threshold_switch
: PLMD::adjmat::TopologyMatrix
- Ti
: PLMD::sasa::SASA_HASEL
, PLMD::sasa::SASA_LCPO
- time
: PLMD::isdb::Caliber
, PLMD::molfile::md_ts
, PLMD::Units
- time_
: PLMD::ves::Opt_Adam
- time_md
: PLMD::ves::CoeffsBase
- timer
: PLMD::piv::PIV
- timers
: PLMD::vesselbase::ActionWithVessel
- timestep
: PLMD::Atoms
- timeString
: PLMD::Units
- timeval
: PLMD::molfile::md_header
- TINY
: PLMD::Minimise1DBrent< FCLASS >
- title
: PLMD::molfile::md_header
, PLMD::molfile::molfile_metadata_t
, PLMD::molfile::trx_hdr
- tmom
: PLMD::crystallization::Steinhardt
- tmp_atoms
: PLMD::MultiValue
- tmp_index
: PLMD::vesselbase::StoreDataVessel
- tmp_p
: PLMD::multicolvar::BridgedMultiColvarFunction
- tmpder
: PLMD::MultiValue
- tmpforces
: PLMD::multicolvar::VolumeGradientBase
, PLMD::vesselbase::ActionWithVessel
- tmpval
: PLMD::MultiValue
- to
: PLMD::bias::ABMD
- todoAutomatic_
: PLMD::opes::ECVlinear
, PLMD::opes::ECVmultiThermal
- todoAutomatic_beta_
: PLMD::opes::ECVmultiThermalBaric
- todoAutomatic_pres_
: PLMD::opes::ECVmultiThermalBaric
- tol
: PLMD::Brent1DRootSearch< FCLASS >
, PLMD::dimred::SmacofMDS
, PLMD::Minimise1DBrent< FCLASS >
- tolerance
: PLMD::mapping::AdaptivePath
, PLMD::vesselbase::ActionWithVessel
- top_size
: PLMD::molfile::trx_hdr
, PLMD::xdrfile::t_trnheader
- tot_prob_
: PLMD::ves::VesDeltaF
- tot_size
: PLMD::isdb::NOE
, PLMD::isdb::PRE
- tot_work
: PLMD::bias::MovingRestraint
- total
: PLMD::Stopwatch::Watch
- total_dist_
: PLMD::maze::Random_Acceleration_MD
, PLMD::maze::Steered_MD
- total_distance_
: PLMD::maze::OptimizerBias
- total_prefactor_
: PLMD::s2cm::S2ContactModel
- totalcharge
: PLMD::molfile::molfile_qm_sysinfo_t
- totalWork
: PLMD::bias::MaxEnt
- totcsatoms
: PLMD::isdb::CS2Backbone::ChemicalShift
- totNumECVs_
: PLMD::opes::ExpansionCVs
- transf_deriv_expression_
: PLMD::ves::BF_Custom
- transf_deriv_lepton_ref_
: PLMD::ves::BF_Custom
- transf_value_expression_
: PLMD::ves::BF_Custom
- transf_value_lepton_ref_
: PLMD::ves::BF_Custom
- transf_variable_str_
: PLMD::ves::BF_Custom
- transformed
: PLMD::dimred::SketchMapBase
- transition_bias_
: PLMD::bias::MetaD
- transitionwells_
: PLMD::bias::MetaD
- translation
: PLMD::maze::Member
- trig_metric
: PLMD::ReferenceArguments
- trimer
: PLMD::colvar::Dimer
- trx
: PLMD::molfile::md_file
- tstart
: PLMD::bias::MaxEnt
- tt
: PLMD::ReferenceConfigurationOptions
- tt_specs_
: PLMD::bias::MetaD
- twolists_
: PLMD::NeighborList
- type
: PLMD::bias::MaxEnt
, PLMD::Communicator::ConstData
, PLMD::Communicator::Data
, PLMD::FlexibleBin
, PLMD::generic::DumpAtoms
, PLMD::generic::FitToTemplate
, PLMD::generic::ResetCell
, PLMD::HistogramBead
, PLMD::isdb::CS2Backbone
, PLMD::lepton::ParseToken
, PLMD::molfile::molfile_atom_t
, PLMD::molfile::molfile_graphics_t
, PLMD::molfile::molfile_qm_wavefunction_t
, PLMD::Pbc
, PLMD::SwitchingFunction
, PLMD::ves::FermiSwitchingFunction
- type_
: PLMD::ves::BasisFunctions
, PLMD::ves::Optimizer
, PLMD::ves::TargetDistribution
- types
: PLMD::Keywords
- typesTable
: PLMD::colvar::GHBFIX