- f -
- f
: PLMD::MDAtomsTyped< T >
, PLMD::molfile::md_file
- f_size
: PLMD::molfile::trx_hdr
, PLMD::xdrfile::t_trnheader
- fa
: PLMD::Brent1DRootSearch< FCLASS >
, PLMD::Minimise1DBrent< FCLASS >
- fa_max_stride_
: PLMD::bias::MetaD
- fa_min_acceleration_
: PLMD::bias::MetaD
- fa_update_frequency_
: PLMD::bias::MetaD
- fact
: PLMD::Random
- fadefact
: PLMD::mapping::AdaptivePath
- fake_arg_names
: PLMD::ReferenceConfiguration
- fake_atom_numbers
: PLMD::ReferenceConfiguration
- fake_data
: PLMD::analysis::ReadDissimilarityMatrix
- fake_der
: PLMD::F1dim< FCLASS >
- fake_metric
: PLMD::ReferenceConfiguration
- fake_refargs
: PLMD::ReferenceConfiguration
- fake_refatoms
: PLMD::ReferenceConfiguration
- fast
: PLMD::OptimalRMSD
- fastrational
: PLMD::SwitchingFunction
- fb
: PLMD::Brent1DRootSearch< FCLASS >
, PLMD::Minimise1DBrent< FCLASS >
- fbox
: PLMD::generic::EffectiveEnergyDrift
- fc
: PLMD::Minimise1DBrent< FCLASS >
- fcp
: PLMD::Subprocess
- fermi_exp_max_
: PLMD::ves::FermiSwitchingFunction
- fermi_lambda_
: PLMD::ves::FermiSwitchingFunction
- fes_file_fmt_
: PLMD::ves::VesBias
- fes_filename_
: PLMD::ves::VesBias
- fes_fileoutput_active_
: PLMD::ves::VesBias
- fes_grid_pntr_
: PLMD::ves::LinearBasisSetExpansion
, PLMD::ves::TargetDistribution
- fes_output_active_
: PLMD::ves::Optimizer
- fes_output_stride_
: PLMD::ves::Optimizer
- fes_var_lepton_ref_
: PLMD::ves::TD_Custom
- fes_var_str_
: PLMD::ves::TD_Custom
- fesproj_fileoutput_active_
: PLMD::ves::VesBias
- fesproj_output_active_
: PLMD::ves::Optimizer
- fesproj_output_stride_
: PLMD::ves::Optimizer
- FF_rank
: PLMD::isdb::SAXS
- FF_value
: PLMD::isdb::SAXS
- FFf_value
: PLMD::isdb::SAXS
- ffict
: PLMD::bias::ExtendedLagrangian
, PLMD::logmfd::LogMFD
- fframes
: PLMD::mapping::Mapping
- fib_increment
: PLMD::gridtools::GridVessel
- fib_nlist
: PLMD::gridtools::GridVessel
- fib_offset
: PLMD::gridtools::GridVessel
- fib_shift
: PLMD::gridtools::GridVessel
- fict
: PLMD::bias::ExtendedLagrangian
, PLMD::logmfd::LogMFD
- fict_ave
: PLMD::logmfd::LogMFD
- fict_max
: PLMD::logmfd::LogMFD
- fict_min
: PLMD::logmfd::LogMFD
- fictValue
: PLMD::bias::ExtendedLagrangian
, PLMD::logmfd::LogMFD
- field_iteration_
: PLMD::ves::CoeffsBase
- field_ncoeffs_total_
: PLMD::ves::CoeffsBase
- field_ndimensions_
: PLMD::ves::CoeffsBase
- field_shape_prefix_
: PLMD::ves::CoeffsBase
- field_time_
: PLMD::ves::CoeffsBase
- field_type_
: PLMD::ves::CoeffsBase
- fieldChanged
: PLMD::OFile
- fieldFmt
: PLMD::OFile
- fields
: PLMD::IFile
, PLMD::OFile
- file
: PLMD::analysis::Committor
, PLMD::Exception::Location
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpForces
, PLMD::generic::DumpMassCharge
, PLMD::generic::DumpProjections
, PLMD::generic::Print
- filename
: PLMD::adjmat::DumpGraph
, PLMD::analysis::OutputColvarFile
, PLMD::analysis::OutputPDBFile
, PLMD::dimred::OutputPCAProjection
, PLMD::generic::Read
, PLMD::gridtools::GridPrintingBase
- filename_extension
: PLMD::molfile::molfile_plugin_t
- filenames
: PLMD::function::FilesHandler
- filenames_have_iteration_number_
: PLMD::ves::VesBias
- files
: PLMD::Action
, PLMD::PlumedMain
- filter
: PLMD::multicolvar::MultiColvarFilter
- final_value
: PLMD::vesselbase::ValueVessel
- final_value_ptr
: PLMD::vesselbase::ValueVessel
- final_weights
: PLMD::bias::ReweightWham
- finalForces
: PLMD::analysis::Histogram
, PLMD::gridtools::GridVessel
- finalize
: plumed_plumedmain_function_holder_x
- finished_read
: PLMD::vesselbase::Vessel
- first
: PLMD::generic::DumpMassCharge
, PLMD::generic::Plumed
, PLMD::vatom::Center
- first_bias_
: PLMD::isdb::Rescale
- first_status_
: PLMD::isdb::EMMI
- first_step_
: PLMD::maze::Optimizer
- first_time_
: PLMD::isdb::EMMI
, PLMD::maze::Optimizer
- first_time_w_
: PLMD::isdb::EMMI
- firstPosClose
: PLMD::colvar::PathMSDBase
- firstStepFlag
: PLMD::sasa::SASA_HASEL
, PLMD::sasa::SASA_LCPO
- firsttime
: PLMD::bias::ExtendedLagrangian
, PLMD::colvar::CoordinationBase
, PLMD::gridtools::FindContour
, PLMD::gridtools::FindContourSurface
- firstTime
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- firsttime
: PLMD::logmfd::LogMFD
, PLMD::multicolvar::BridgedMultiColvarFunction
, PLMD::s2cm::S2ContactModel
- firstTimeW
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- fixed_sigma_
: PLMD::opes::OPESmetad< mode >
- fixed_stepsize_
: PLMD::ves::Optimizer
- fixedn
: PLMD::mapping::AdaptivePath
- flags
: PLMD::PDB
, PLMD::TypesafePtr
, plumed_safeptr
, plumed_safeptr_x
- flexbin_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- flog
: PLMD::logmfd::LogMFD
- flying_
: PLMD::bias::MetaD
- fmass
: PLMD::piv::PIV
- fmin
: PLMD::Minimise1DBrent< FCLASS >
- fmt
: PLMD::analysis::Committor
, PLMD::analysis::OutputColvarFile
, PLMD::analysis::OutputPDBFile
, PLMD::analysis::PrintDissimilarityMatrix
, PLMD::bias::MaxEnt
, PLMD::dimred::OutputPCAProjection
, PLMD::dimred::PCA
, PLMD::function::FuncSumHills
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpForces
, PLMD::generic::DumpProjections
, PLMD::generic::EffectiveEnergyDrift
, PLMD::generic::Print
, PLMD::gridtools::GridPrintingBase
, PLMD::molfile::md_file
- fmt_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
, PLMD::eds::EDS
, PLMD::fisst::FISST
, PLMD::GridBase
- fmt_gro_box
: PLMD::generic::DumpAtoms
- fmt_gro_pos
: PLMD::generic::DumpAtoms
- fmt_xyz
: PLMD::generic::DumpAtoms
, PLMD::gridtools::FindContour
, PLMD::multicolvar::DumpMultiColvar
- fname
: PLMD::analysis::PrintDissimilarityMatrix
, PLMD::analysis::ReadDissimilarityMatrix
- force_
: PLMD::maze::OptimizerBias
- force_normalization_
: PLMD::ves::TargetDistribution
- force_weight_
: PLMD::fisst::FISST
- forceOnEnergy
: PLMD::ActionAtomistic
, PLMD::Atoms
- forceOnExtraCV
: PLMD::ActionAtomistic
- forces
: PLMD::ActionAtomistic
, PLMD::Atoms
, PLMD::generic::EffectiveEnergyDrift
, PLMD::generic::Plumed
, PLMD::gridtools::GridVessel
, PLMD::isdb::EMMI
, PLMD::isdb::MetainferenceBase
, PLMD::mapping::PCAVars
, PLMD::multicolvar::DistanceFromContour
- forces_
: PLMD::fisst::FISST
- forcesHaveBeenSet
: PLMD::Atoms
- forcesToApply
: PLMD::analysis::Histogram
, PLMD::gridtools::ActionWithIntegral
, PLMD::isdb::EMMI
, PLMD::isdb::MetainferenceBase
, PLMD::mapping::Mapping
, PLMD::mapping::PCAVars
, PLMD::multicolvar::MultiColvarBase
, PLMD::secondarystructure::SecondaryStructureRMSD
- foreignDeltaBias
: PLMD::GREX
- foundoneclose
: PLMD::mapping::SpathVessel
- foundprint
: PLMD::gridtools::GridVessel
- fourier_params
: PLMD::gridtools::FourierTransform
- fp
: PLMD::FileBase
, PLMD::xdrfile::XDRFILE
- fpc
: PLMD::Subprocess
- fpcp
: PLMD::Subprocess
- fppc
: PLMD::Subprocess
- fractional
: PLMD::multicolvar::MultiColvarDensity
- freq_adaptive_
: PLMD::bias::MetaD
- friction
: PLMD::bias::ExtendedLagrangian
- ftargets
: PLMD::dimred::SketchMapBase
- ftilde_
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- ftype
: PLMD::MultiDomainRMSD
- fullatomlist_
: PLMD::NeighborList
- fullList
: PLMD::Atoms
- fullTaskList
: PLMD::vesselbase::ActionWithVessel
- func
: PLMD::F1dim< FCLASS >
, PLMD::function::Custom
- funcname
: PLMD::GridBase
- function
: PLMD::adjmat::AdjacencyMatrixVessel
, PLMD::lepton::Operation
- functions
: PLMD::vesselbase::ActionWithVessel
, plumed_symbol_table_type_x
- Fvol
: PLMD::piv::PIV
- fx
: PLMD::MDAtomsTyped< T >
- fy
: PLMD::MDAtomsTyped< T >
- fz
: PLMD::MDAtomsTyped< T >