Here is a list of all class members with links to the classes they belong to:
- l -
- label
: PLMD::Action
- label_
: PLMD::maze::Optimizer
, PLMD::ves::CoeffsBase
, PLMD::ves::LinearBasisSetExpansion
- labels
: PLMD::colvar::PathMSDBase
- lagmultfname
: PLMD::bias::MaxEnt
- lagmultOfile_
: PLMD::bias::MaxEnt
- lambda
: PLMD::bias::MaxEnt
, PLMD::colvar::PathMSDBase
, PLMD::function::FuncPathGeneral
, PLMD::function::FuncPathMSD
, PLMD::mapping::PathBase
, PLMD::molfile::trx_hdr
, PLMD::SwitchingFunction
- lambda0_
: PLMD::opes::ECVlinear
- lambda_
: PLMD::crystallization::EnvironmentSimilarity
, PLMD::ves::TD_Exponential
- lambdad
: PLMD::xdrfile::t_trnheader
- lambdaf
: PLMD::xdrfile::t_trnheader
- lambdas_
: PLMD::ves::TD_ExponentiallyModifiedGaussian
- landmark_indices
: PLMD::analysis::LandmarkSelectionBase
- LandmarkSelectionBase()
: PLMD::analysis::LandmarkSelectionBase
- LandmarkStaged()
: PLMD::analysis::LandmarkStaged
- lap
: PLMD::Stopwatch::Watch
- lastError
: PLMD::DLLoader
- lastStart
: PLMD::Stopwatch::Watch
- lastupdate_
: PLMD::NeighborList
- lboundDerivative()
: PLMD::HistogramBead
- lcell_lists
: PLMD::LinkCells
- lcell_starts
: PLMD::LinkCells
- lcell_tots
: PLMD::LinkCells
- LCPOparam
: PLMD::sasa::SASA_LCPO
- learn_replica
: PLMD::bias::MaxEnt
- LeftParen
: PLMD::lepton::ParseToken
- len
: PLMD::mapping::PathReparameterization
- len_bi
: PLMD::multicolvar::VolumeCavity
, PLMD::multicolvar::VolumeTetrapore
- len_cross
: PLMD::multicolvar::VolumeCavity
, PLMD::multicolvar::VolumeTetrapore
- len_perp
: PLMD::multicolvar::VolumeCavity
, PLMD::multicolvar::VolumeTetrapore
- length
: PLMD::Units
- lengthN2
: PLMD::isdb::CS2Backbone::RingInfo
- lengthNV
: PLMD::isdb::CS2Backbone::RingInfo
- lengthString
: PLMD::Units
- lenunit
: PLMD::generic::DumpAtoms
, PLMD::gridtools::FindContour
, PLMD::gridtools::GridToXYZ
, PLMD::multicolvar::DumpMultiColvar
, PLMD::multicolvar::VolumeCavity
, PLMD::multicolvar::VolumeTetrapore
- lepton_func
: PLMD::SwitchingFunction
- lepton_ref
: PLMD::function::Custom
, PLMD::SwitchingFunction
- lepton_ref_deriv
: PLMD::function::Custom
, PLMD::SwitchingFunction
- LeptonException()
: PLMD::Plumed::LeptonException
- leptontype
: PLMD::SwitchingFunction
- leptonx2
: PLMD::SwitchingFunction
- LessThan()
: PLMD::vesselbase::LessThan
- LEU
: PLMD::isdb::CS2Backbone
- LEU_BB
: PLMD::isdb::SAXS
- LEU_SC1
: PLMD::isdb::SAXS
- ligand_com
: PLMD::funnel::FUNNEL_PS
- LIKE_GAUSS
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- LIKE_LOGN
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- limitmax
: PLMD::FlexibleBin
- limitmin
: PLMD::FlexibleBin
- line
: PLMD::Action
, PLMD::ActionOptions
, PLMD::CLToolOptions
, PLMD::Exception::Location
, PLMD::ReferenceConfiguration
, PLMD::vesselbase::Vessel
- LinearBasisSet
: PLMD::ves::CoeffsBase
- LinearBasisSetExpansion()
: PLMD::ves::LinearBasisSetExpansion
- linearInterpolation()
: PLMD::ves::GridLinearInterpolation
- linemin()
: PLMD::MinimiseBase< FCLASS >
- linePrefix
: PLMD::OFile
- linesearch()
: PLMD::RootFindingBase< FCLASS >
- link()
: PLMD::FileBase
, PLMD::OFile
- link_cutoff
: PLMD::LinkCells
- linkAction()
: PLMD::ves::BasisFunctions
, PLMD::ves::CoeffsBase
, PLMD::ves::LinearBasisSetExpansion
, PLMD::ves::TargetDistribution
, PLMD::ves::TD_LinearCombination
, PLMD::ves::TD_ProductCombination
, PLMD::ves::TD_ProductDistribution
- linkBiasGrid()
: PLMD::ves::TargetDistribution
, PLMD::ves::TD_LinearCombination
, PLMD::ves::TD_ProductCombination
, PLMD::ves::TD_ProductDistribution
- linkBiasWithoutCutoffGrid()
: PLMD::ves::TargetDistribution
, PLMD::ves::TD_LinearCombination
, PLMD::ves::TD_ProductCombination
, PLMD::ves::TD_ProductDistribution
- LinkCells()
: PLMD::LinkCells
- linkcells
: PLMD::multicolvar::MultiColvarBase
- linked
: PLMD::OFile
- linkFesGrid()
: PLMD::ves::TargetDistribution
, PLMD::ves::TD_LinearCombination
, PLMD::ves::TD_ProductCombination
, PLMD::ves::TD_ProductDistribution
- linkOptimizer()
: PLMD::ves::VesBias
- linkVesBias()
: PLMD::ves::BasisFunctions
, PLMD::ves::CoeffsBase
, PLMD::ves::LinearBasisSetExpansion
, PLMD::ves::TargetDistribution
, PLMD::ves::TD_LinearCombination
, PLMD::ves::TD_ProductCombination
, PLMD::ves::TD_ProductDistribution
- list()
: PLMD::CLToolRegister
- llread()
: PLMD::IFile
- llwrite()
: PLMD::OFile
- lm_inv_
: PLMD::eds::EDS
- lm_mixing_par_
: PLMD::eds::EDS
- load()
: PLMD::DLLoader
, PLMD::PlumedMain
- Load()
: PLMD::setup::Load
- loaded
: PLMD::PlumedHandle
- loadReference()
: PLMD::function::FuncPathGeneral
- local
: PLMD::PlumedHandle
- local_buffer
: PLMD::vesselbase::StoreDataVessel
- local_dsyevr()
: PLMD::TensorGenericAux
- local_search()
: PLMD::maze::Memetic
- local_search_off()
: PLMD::maze::Memetic
- local_search_on()
: PLMD::maze::Memetic
- local_search_on_
: PLMD::maze::Memetic
- local_search_rate_
: PLMD::maze::Memetic
- local_search_type_
: PLMD::maze::Memetic
- LocalAverage
: PLMD::multicolvar::AtomValuePack
, PLMD::multicolvar::LocalAverage
- localDeltaBias
: PLMD::GREX
- LocalEnsemble()
: PLMD::function::LocalEnsemble
- LocalSteinhardt()
: PLMD::crystallization::LocalSteinhardt< T >
- localUNow
: PLMD::GREX
- localUSwap
: PLMD::GREX
- Location()
: PLMD::Exception::Location
- lockContributors()
: PLMD::vesselbase::ActionWithVessel
- lockRequestArguments
: PLMD::ActionWithArguments
- lockRequestAtoms
: PLMD::ActionAtomistic
- lockRequests()
: PLMD::Action
, PLMD::ActionAtomistic
, PLMD::ActionWithArguments
, PLMD::analysis::AnalysisBase
, PLMD::isdb::EMMI
, PLMD::isdb::MetainferenceBase
, PLMD::mapping::Mapping
, PLMD::mapping::PCAVars
, PLMD::vesselbase::ActionWithAveraging
- log
: PLMD::Action
, PLMD::function::FilesHandler
- Log()
: PLMD::lepton::Operation
- LOG
: PLMD::lepton::Operation
- log
: PLMD::PlumedMain
, PLMD::Stopwatch
, PLMD::TargetDist
- log2()
: PLMD::ves::VesTools
- log_fwd
: PLMD::PlumedMain
- log_golden2
: PLMD::gridtools::GridVessel
- log_targetdist_grid_pntr_
: PLMD::ves::LinearBasisSetExpansion
, PLMD::ves::TargetDistribution
- logActivity
: PLMD::generic::Debug
- logAllValuesAndDerivatives()
: PLMD::Grid
- logClose
: PLMD::colvar::PathMSDBase
- logdet
: PLMD::Matrix< T >
- LogMFD()
: PLMD::logmfd::LogMFD
- logRequestedAtoms
: PLMD::generic::Debug
- logTargetDistGrid()
: PLMD::ves::TargetDistribution
- logTemperingSpecs()
: PLMD::bias::MetaD
- logweights
: PLMD::analysis::ReadAnalysisFrames
- logweights_
: PLMD::eds::EDS
- loopEnd()
: PLMD::mapping::PathReparameterization
- Loss()
: PLMD::maze::Loss
- loss_
: PLMD::maze::Optimizer
- low_sf
: PLMD::adjmat::TopologyMatrix
- lowb
: PLMD::HistogramBead
- lowdf
: PLMD::dimred::SketchMapBase
- lower
: PLMD::DRMSD
, PLMD::generic::UpdateIf
- lower_only_
: PLMD::opes::ECVumbrellasFile
, PLMD::opes::ECVumbrellasLine
- lowerboundary
: PLMD::drr::UIestimator::n_matrix
, PLMD::drr::UIestimator::n_vector< T >
, PLMD::drr::UIestimator::UIestimator
- lowerlimits
: PLMD::analysis::Committor
- Lowest()
: PLMD::vesselbase::Lowest
- lowI_
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
, PLMD::BiasRepresentation
, PLMD::function::FuncSumHills
- lowmem
: PLMD::vesselbase::ActionWithVessel
- ls()
: PLMD::Tools
- lsearch()
: PLMD::RootFindingBase< FCLASS >
- lsfmax
: PLMD::adjmat::TopologyMatrix
- ltmp_ind
: PLMD::multicolvar::VolumeInEnvelope
- ltmp_pos
: PLMD::multicolvar::VolumeInEnvelope
- luus_jaakola()
: PLMD::maze::Memetic
- LWalls()
: PLMD::bias::LWalls
, PLMD::manyrestraints::LWalls
- lweight
: PLMD::vesselbase::ActionWithAveraging
- lweights
: PLMD::analysis::LandmarkSelectionBase
- LYS
: PLMD::isdb::CS2Backbone
- LYS_BB
: PLMD::isdb::SAXS
- LYS_SC1
: PLMD::isdb::SAXS
- LYS_SC2
: PLMD::isdb::SAXS