|
|
FindContourSurface (PLMD::gridtools) |
PathBase (PLMD::mapping) |
| FindSphericalContour (PLMD::gridtools) |
PathMSD (PLMD::colvar) |
| Tools::_Unique_if (PLMD) |
fio_iovec (PLMD::molfile) |
PathMSDBase (PLMD::colvar) |
| Tools::_Unique_if< T[]> (PLMD) |
FISST (PLMD::fisst) |
PathReparameterization (PLMD::mapping) |
| Tools::_Unique_if< T[N]> (PLMD) |
FitToTemplate (PLMD::generic) |
PathTools (PLMD::mapping) |
|
|
FixedAtom (PLMD::vatom) |
Pbc (PLMD) |
| FlexibleBin (PLMD) |
PBMetaD (PLMD::bias) |
| ABMD (PLMD::bias) |
Flush (PLMD::generic) |
PCA (PLMD::dimred) |
| Action (PLMD) |
ForwardDecl (PLMD) |
PCARMSD (PLMD::colvar) |
| ActionAnyorder (PLMD) |
FourierTransform (PLMD::gridtools) |
PCAVars (PLMD::mapping) |
| ActionAtomistic (PLMD) |
FretEfficiency (PLMD::isdb) |
PDB (PLMD) |
| ActionOptions (PLMD) |
FuncPathGeneral (PLMD::function) |
PdbRenumber (PLMD::cltools) |
| ActionPilot (PLMD) |
FuncPathMSD (PLMD::function) |
PesMD (PLMD::cltools) |
| ActionRegister (PLMD) |
FuncSumHills (PLMD::function) |
Piecewise (PLMD::function) |
| ActionSet (PLMD) |
Function (PLMD::function) |
PIV (PLMD::piv) |
| ActionSetup (PLMD) |
FunctionVessel (PLMD::vesselbase) |
PlaceholderFunction (PLMD::lepton) |
| ActionShortcut (PLMD) |
Funnel (PLMD::funnel) |
plumed |
| ActionVolume (PLMD::multicolvar) |
FUNNEL_PS (PLMD::funnel) |
Plumed (PLMD) |
| ActionWithArguments (PLMD) |
|
Plumed (PLMD::generic) |
| ActionWithAveraging (PLMD::vesselbase) |
plumed_error |
| ActionWithGrid (PLMD::gridtools) |
PBMetaD::Gaussian (PLMD::bias) |
PlumedMain::plumed_error_handler (PLMD) |
| ActionWithInputGrid (PLMD::gridtools) |
MetaD::Gaussian (PLMD::bias) |
plumed_function_holder |
| ActionWithInputMatrix (PLMD::adjmat) |
GenericMolInfo (PLMD) |
plumed_nothrow_handler |
| ActionWithInputVessel (PLMD::vesselbase) |
GenExample (PLMD::cltools) |
plumed_nothrow_handler_x |
| ActionWithIntegral (PLMD::gridtools) |
GenTemplate (PLMD::cltools) |
plumed_plumedmain_function_holder_x |
| ActionWithValue (PLMD) |
GHBFIX (PLMD::colvar) |
plumed_safeptr |
| ActionWithVessel (PLMD::vesselbase) |
Ghost (PLMD::vatom) |
plumed_safeptr_x |
| ActionWithVirtualAtom (PLMD) |
Gradient (PLMD::crystallization) |
plumed_symbol_table_type_x |
| AdaptivePath (PLMD::mapping) |
GradientVessel (PLMD::crystallization) |
PlumedHandle (PLMD) |
| AdjacencyMatrixBase (PLMD::adjmat) |
GREX (PLMD) |
PlumedMain (PLMD) |
| AdjacencyMatrixVessel (PLMD::adjmat) |
Grid (PLMD) |
PolymerAngles (PLMD::crystallization) |
| AlignedMatrixBase (PLMD::adjmat) |
GridBase (PLMD) |
Position (PLMD::colvar) |
| AlphaBeta (PLMD::multicolvar) |
GridIntegrationWeights (PLMD::ves) |
PRE (PLMD::isdb) |
| AlphaRMSD (PLMD::secondarystructure) |
GridLinearInterpolation (PLMD::ves) |
Print (PLMD::generic) |
| AltMin (PLMD::vesselbase) |
GridPrintingBase (PLMD::gridtools) |
PrintDissimilarityMatrix (PLMD::analysis) |
| AnalysisBase (PLMD::analysis) |
GridSearch (PLMD::gridtools) |
ProbWeight (PLMD) |
| Angle (PLMD) |
GridToXYZ (PLMD::gridtools) |
ProjectionOnAxis (PLMD::colvar) |
| Angle (PLMD::colvar) |
GridVessel (PLMD::gridtools) |
ProjectNonLandmarkPoints (PLMD::dimred) |
| Angles (PLMD::multicolvar) |
Group (PLMD::generic) |
PropertyMap (PLMD::colvar) |
| annfunc::ANN (PLMD) |
Gyration (PLMD::colvar) |
PropertyMap (PLMD::mapping) |
| ANN (PLMD::function::annfunc) |
|
Puckering (PLMD::colvar) |
| AntibetaRMSD (PLMD::secondarystructure) |
|
| ArgumentOnlyDistance (PLMD) |
Stopwatch::Handler (PLMD) |
| AsmJitRuntimePtr (PLMD::lepton) |
Subprocess::Handler (PLMD) |
Q3 (PLMD::crystallization) |
| Exception::Assertion (PLMD) |
HBondMatrix (PLMD::adjmat) |
Q4 (PLMD::crystallization) |
| AtomNumber (PLMD) |
HBPammHydrogens (PLMD::pamm) |
Q6 (PLMD::crystallization) |
| Atoms (PLMD) |
HBPammMatrix (PLMD::pamm) |
|
| AtomValuePack (PLMD::multicolvar) |
HBPammObject (PLMD::pamm) |
| Average (PLMD::analysis) |
Highest (PLMD::vesselbase) |
Random (PLMD) |
| AverageOnGrid (PLMD::gridtools) |
Histogram (PLMD::vesselbase) |
Random_Acceleration_MD (PLMD::maze) |
| AverageVessel (PLMD::analysis) |
Histogram (PLMD::analysis) |
Random_Walk (PLMD::maze) |
| AveragingVessel (PLMD::vesselbase) |
HistogramBead (PLMD) |
RandomExchanges (PLMD::generic) |
|
|
HistogramOnGrid (PLMD::gridtools) |
RDC (PLMD::isdb) |
|
|
Read (PLMD::generic) |
| BasisFunctions (PLMD::ves) |
ReadAnalysisFrames (PLMD::analysis) |
| Between (PLMD::vesselbase) |
IFile (PLMD) |
ReadDissimilarityMatrix (PLMD::analysis) |
| BF_Chebyshev (PLMD::ves) |
PathMSDBase::ImagePath (PLMD::colvar) |
ReferenceArguments (PLMD) |
| BF_Combined (PLMD::ves) |
PathMSDBase::imgOrderByDist (PLMD::colvar) |
ReferenceAtoms (PLMD) |
| BF_Cosine (PLMD::ves) |
PathMSDBase::imgOrderBySimilarity (PLMD::colvar) |
ReferenceConfiguration (PLMD) |
| BF_CubicBsplines (PLMD::ves) |
Include (PLMD::generic) |
ReferenceConfigurationOptions (PLMD) |
| BF_Custom (PLMD::ves) |
Info (PLMD::cltools) |
ReferenceValuePack (PLMD) |
| BF_Fourier (PLMD::ves) |
InPlaneDistances (PLMD::multicolvar) |
Communicator::Request (PLMD) |
| BF_Gaussians (PLMD::ves) |
IntegrateGrid (PLMD::gridtools) |
Rescale (PLMD::isdb) |
| BF_Legendre (PLMD::ves) |
IntermolecularDRMSD (PLMD) |
ReselectLandmarks (PLMD::analysis) |
| BF_Powers (PLMD::ves) |
InterMolecularTorsions (PLMD::crystallization) |
ResetCell (PLMD::generic) |
| BF_Sine (PLMD::ves) |
InterpolateGrid (PLMD::gridtools) |
Restart (PLMD::setup) |
| BF_Wavelets (PLMD::ves) |
IntramolecularDRMSD (PLMD) |
Restraint (PLMD::bias) |
| Bias (PLMD::bias) |
Plumed::Invalid (PLMD) |
ReweightBase (PLMD::bias) |
| BiasRepresentation (PLMD) |
|
ReweightBias (PLMD::bias) |
| BiasValue (PLMD::bias) |
ReweightMetad (PLMD::bias) |
| BiasWeight (PLMD) |
JCoupling (PLMD::isdb) |
ReweightTemperaturePressure (PLMD::bias) |
| BondOrientation (PLMD::crystallization) |
|
ReweightWham (PLMD::bias) |
| Brent1DRootSearch (PLMD) |
CS2Backbone::RingInfo (PLMD::isdb) |
| Bridge (PLMD::multicolvar) |
OPESmetad::kernel (PLMD::opes) |
RMSD (PLMD::colvar) |
| BridgedMultiColvarFunction (PLMD::multicolvar) |
KernelFunctions (PLMD) |
RMSD (PLMD) |
| BridgeVessel (PLMD::vesselbase) |
Keywords::KeyType (PLMD) |
RMSDBase (PLMD) |
|
|
Keywords (PLMD) |
RMSDCoreData (PLMD) |
| kt (PLMD::cltools) |
rnd (PLMD::maze) |
| Caliber (PLMD::isdb) |
|
RootFindingBase (PLMD) |
| CatomPack (PLMD::multicolvar) |
MatrixSquareBracketsAccess::Row (PLMD) |
| Cell (PLMD::colvar) |
LandmarkSelectionBase (PLMD::analysis) |
|
| Center (PLMD::vatom) |
LandmarkStaged (PLMD::analysis) |
| CenterOfMultiColvar (PLMD::multicolvar) |
LatticeReduction (PLMD) |
S2ContactModel (PLMD::s2cm) |
| CS2Backbone::ChemicalShift (PLMD::isdb) |
Plumed::LeptonException (PLMD) |
Plumed::SafePtr (PLMD) |
| Citations (PLMD) |
LessThan (PLMD::vesselbase) |
SASA_HASEL (PLMD::sasa) |
| ClassicalMultiDimensionalScaling (PLMD::dimred) |
LinearBasisSetExpansion (PLMD::ves) |
SASA_LCPO (PLMD::sasa) |
| CLTool (PLMD) |
LinkCells (PLMD) |
SAXS (PLMD::isdb) |
| CLToolMain (PLMD) |
Load (PLMD::setup) |
SecondaryStructureRMSD (PLMD::secondarystructure) |
| CLToolOptions (PLMD) |
LOCAL_Q3 (PLMD::crystallization) |
Select (PLMD::isdb) |
| CLToolRegister (PLMD) |
LOCAL_Q4 (PLMD::crystallization) |
Selector (PLMD::isdb) |
| CLToolSumHills (PLMD::cltools) |
LOCAL_Q6 (PLMD::crystallization) |
SelectRandomFrames (PLMD::analysis) |
| ClusterAnalysisBase (PLMD::adjmat) |
LocalAverage (PLMD::multicolvar) |
SelectWithStride (PLMD::analysis) |
| ClusterDiameter (PLMD::adjmat) |
LocalEnsemble (PLMD::function) |
ShortcutVessel (PLMD::vesselbase) |
| ClusterDistribution (PLMD::adjmat) |
LocalSteinhardt (PLMD::crystallization) |
SimpleCubic (PLMD::crystallization) |
| ClusteringBase (PLMD::adjmat) |
Exception::Location (PLMD) |
SimpleMD (PLMD::cltools) |
| ClusterProperties (PLMD::adjmat) |
Log (PLMD) |
SimpleRMSD (PLMD) |
| ClusterSize (PLMD::adjmat) |
LogMFD (PLMD::logmfd) |
Simulated_Annealing (PLMD::maze) |
| ClusterWithSurface (PLMD::adjmat) |
LoopUnroller (PLMD) |
SingleDomainRMSD (PLMD) |
| CoeffsBase (PLMD::ves) |
Loss (PLMD::maze) |
SketchMap (PLMD::dimred) |
| CoeffsMatrix (PLMD::ves) |
Lowest (PLMD::vesselbase) |
SketchMapBase (PLMD::dimred) |
| CoeffsVector (PLMD::ves) |
LWalls (PLMD::manyrestraints) |
SketchMapConjGrad (PLMD::dimred) |
| Colvar (PLMD) |
LWalls (PLMD::bias) |
SketchMapPointwise (PLMD::dimred) |
| ColvarFake (PLMD::colvar) |
|
SketchMapRead (PLMD::dimred) |
| Combine (PLMD::function) |
SketchMapSmacof (PLMD::dimred) |
| Committor (PLMD::analysis) |
MahalanobisDistance (PLMD) |
SMAC (PLMD::crystallization) |
| Communicator (PLMD) |
Manual (PLMD::cltools) |
SMACMatrix (PLMD::adjmat) |
| CompiledExpression (PLMD::lepton) |
ManyRestraintsBase (PLMD::manyrestraints) |
SMACOF (PLMD::dimred) |
| Completion (PLMD::cltools) |
Mapping (PLMD::mapping) |
SmacofMDS (PLMD::dimred) |
| ConjugateGradient (PLMD) |
MarginalWeight (PLMD::ves) |
Sort (PLMD::function) |
| MatrixSquareBracketsAccess::Const_row (PLMD) |
Matheval (PLMD::function) |
SparseGrid (PLMD) |
| Constant (PLMD::colvar) |
Matrix (PLMD) |
SpathVessel (PLMD::mapping) |
| Communicator::ConstData (PLMD) |
MatrixColumnSums (PLMD::adjmat) |
Sprint (PLMD::adjmat) |
| ContactAlignedMatrix (PLMD::adjmat) |
MatrixRowSums (PLMD::adjmat) |
Stats (PLMD::function) |
| ContactMap (PLMD::colvar) |
MatrixSquareBracketsAccess (PLMD) |
Communicator::Status (PLMD) |
| ContactMatrix (PLMD::adjmat) |
Max (PLMD::vesselbase) |
Steered_MD (PLMD::maze) |
| ContourFindingBase (PLMD::gridtools) |
MaxEnt (PLMD::bias) |
Steinhardt (PLMD::crystallization) |
| convergence (PLMD::opes) |
md_atom (PLMD::molfile) |
Stopwatch (PLMD) |
| ConvertToFES (PLMD::gridtools) |
md_box (PLMD::molfile) |
StoreDataVessel (PLMD::vesselbase) |
| Coordination (PLMD::colvar) |
md_file (PLMD::molfile) |
Subprocess (PLMD) |
| CoordinationBase (PLMD::colvar) |
md_header (PLMD::molfile) |
SubprocessPid (PLMD) |
| CoordinationNumbers (PLMD::multicolvar) |
MD_LinearExpansionPES (PLMD::ves) |
Sum (PLMD::vesselbase) |
| CS2Backbone (PLMD::isdb) |
md_ts (PLMD::molfile) |
SwitchingFunction (PLMD) |
| CS2BackboneDB (PLMD::isdb) |
MDAtomsBase (PLMD) |
|
| CubicHarmonicBase (PLMD::crystallization) |
MDAtomsTyped (PLMD) |
| Custom (PLMD::function) |
Mean (PLMD::vesselbase) |
t_trnheader (PLMD::xdrfile) |
| CustomFunction (PLMD::lepton) |
Member (PLMD::maze) |
Target (PLMD::function) |
|
|
Memetic (PLMD::maze) |
TargetDist (PLMD) |
| MetaD (PLMD::bias) |
TargetDistModifer (PLMD::ves) |
| Communicator::Data (PLMD) |
Metainference (PLMD::isdb) |
TargetDistribution (PLMD::ves) |
| DataCollectionObject (PLMD::analysis) |
MetainferenceBase (PLMD::isdb) |
TD_Chi (PLMD::ves) |
| DataFetchingObject (PLMD) |
MetricRegister (PLMD) |
TD_ChiSquared (PLMD::ves) |
| DataFetchingObjectTyped (PLMD) |
Min (PLMD::vesselbase) |
TD_Custom (PLMD::ves) |
| Debug (PLMD::generic) |
Minimise1DBrent (PLMD) |
TD_Exponential (PLMD::ves) |
| tls::delete_ptr (PLMD::maze) |
MinimiseBase (PLMD) |
TD_ExponentiallyModifiedGaussian (PLMD::ves) |
| Density (PLMD::multicolvar) |
MolDataClass (PLMD) |
TD_Gaussian (PLMD::ves) |
| DFSClustering (PLMD::adjmat) |
MoleculeOrientation (PLMD::crystallization) |
TD_GeneralizedExtremeValue (PLMD::ves) |
| DHEnergy (PLMD::colvar) |
MoleculePlane (PLMD::crystallization) |
TD_GeneralizedNormal (PLMD::ves) |
| DihedralCorrelation (PLMD::multicolvar) |
molfile_atom_t (PLMD::molfile) |
TD_Grid (PLMD::ves) |
| DimensionalityReductionBase (PLMD::dimred) |
molfile_graphics_t (PLMD::molfile) |
TD_LinearCombination (PLMD::ves) |
| Dimer (PLMD::colvar) |
molfile_metadata_t (PLMD::molfile) |
TD_Multicanonical (PLMD::ves) |
| Dipole (PLMD::colvar) |
molfile_plugin_t (PLMD::molfile) |
TD_MultithermalMultibaric (PLMD::ves) |
| Direction (PLMD) |
molfile_qm_basis_t (PLMD::molfile) |
TD_ProductCombination (PLMD::ves) |
| Tools::DirectoryChanger (PLMD) |
molfile_qm_hessian_t (PLMD::molfile) |
TD_ProductDistribution (PLMD::ves) |
| Distance (PLMD::colvar) |
molfile_qm_metadata_t (PLMD::molfile) |
TD_Uniform (PLMD::ves) |
| DistanceFromContour (PLMD::multicolvar) |
molfile_qm_sysinfo_t (PLMD::molfile) |
TD_VonMises (PLMD::ves) |
| Distances (PLMD::multicolvar) |
molfile_qm_t (PLMD::molfile) |
TD_WellTempered (PLMD::ves) |
| DLLoader (PLMD) |
molfile_qm_timestep_metadata (PLMD::molfile) |
MetaD::TemperingSpecs (PLMD::bias) |
| Atoms::DomainDecomposition (PLMD) |
molfile_qm_timestep_t (PLMD::molfile) |
Template (PLMD::colvar) |
| DotProductDistance (PLMD) |
molfile_qm_wavefunction_t (PLMD::molfile) |
TensorGeneric (PLMD) |
| Driver (PLMD::cltools) |
molfile_timestep_metadata (PLMD::molfile) |
TensorGenericAux (PLMD) |
| DRMSD (PLMD::colvar) |
molfile_timestep_t (PLMD::molfile) |
Tetrahedral (PLMD::crystallization) |
| DRMSD (PLMD) |
molfile_volumetric_readwrite_t (PLMD::molfile) |
Time (PLMD::generic) |
| DumpAtoms (PLMD::generic) |
molfile_volumetric_t (PLMD::molfile) |
tls (PLMD::maze) |
| DumpCube (PLMD::gridtools) |
MolInfo (PLMD::generic) |
Tools (PLMD) |
| DumpDerivatives (PLMD::generic) |
Moments (PLMD::vesselbase) |
TopologyMatrix (PLMD::adjmat) |
| DumpForces (PLMD::generic) |
MoreThan (PLMD::vesselbase) |
Torsion (PLMD) |
| DumpGraph (PLMD::adjmat) |
MovingRestraint (PLMD::bias) |
Torsion (PLMD::colvar) |
| DumpGrid (PLMD::gridtools) |
MPI_Comm (PLMD) |
Torsions (PLMD::multicolvar) |
| DumpMassCharge (PLMD::generic) |
MPI_Datatype (PLMD) |
Tree (PLMD) |
| DumpMultiColvar (PLMD::multicolvar) |
MPI_Request (PLMD) |
TrigonometricPathVessel (PLMD::mapping) |
| DumpProjections (PLMD::generic) |
MPI_Status (PLMD) |
trx_hdr (PLMD::molfile) |
| DynamicList (PLMD) |
MultiColvarBase (PLMD::multicolvar) |
TypesafePtr (PLMD) |
| DynamicReferenceRestraining (PLMD::drr) |
MultiColvarCombine (PLMD::multicolvar) |
|
|
|
MultiColvarDensity (PLMD::multicolvar) |
| MultiColvarFilter (PLMD::multicolvar) |
UIestimator (PLMD::drr::UIestimator) |
| ECVcustom (PLMD::opes) |
MultiColvarProduct (PLMD::multicolvar) |
Units (PLMD) |
| ECVlinear (PLMD::opes) |
MultiDomainRMSD (PLMD) |
Units (PLMD::setup) |
| ECVmultiThermal (PLMD::opes) |
MultiRMSD (PLMD::colvar) |
UpdateIf (PLMD::generic) |
| ECVmultiThermalBaric (PLMD::opes) |
MultiValue (PLMD) |
UWalls (PLMD::manyrestraints) |
| ECVumbrellasFile (PLMD::opes) |
|
UWalls (PLMD::bias) |
| ECVumbrellasLine (PLMD::opes) |
|
| EDS (PLMD::eds) |
n_matrix (PLMD::drr::UIestimator) |
| EEFSolv (PLMD::colvar) |
n_vector (PLMD::drr::UIestimator) |
Value (PLMD) |
| EffectiveEnergyDrift (PLMD::generic) |
NeighborList (PLMD) |
ValueVessel (PLMD::vesselbase) |
| EMMI (PLMD::isdb) |
NOE (PLMD::isdb) |
VectorGeneric (PLMD) |
| EndPlumed (PLMD::generic) |
NormalizedEuclideanDistance (PLMD) |
VectorMean (PLMD::crystallization) |
| Energy (PLMD::colvar) |
Plumed::NothrowHandler (PLMD) |
VectorMultiColvar (PLMD::crystallization) |
| Ensemble (PLMD::function) |
NumberOfLinks (PLMD::multicolvar) |
VectorSum (PLMD::crystallization) |
| EnvironmentSimilarity (PLMD::crystallization) |
|
VesBias (PLMD::ves) |
| ERMSD (PLMD::colvar) |
VesDeltaF (PLMD::ves) |
| ERMSD (PLMD) |
OFile (PLMD) |
VesLinearExpansion (PLMD::ves) |
| EuclideanDissimilarityMatrix (PLMD::analysis) |
OpenMP (PLMD) |
Vessel (PLMD::vesselbase) |
| EuclideanDistance (PLMD) |
OpenMPVars (PLMD) |
VesselOptions (PLMD::vesselbase) |
| Exception (PLMD) |
Operation (PLMD::lepton) |
VesselRegister (PLMD::vesselbase) |
| Plumed::Exception (PLMD) |
OPESexpanded (PLMD::opes) |
VesTools (PLMD::ves) |
| Exception (PLMD::lepton) |
OPESmetad (PLMD::opes) |
vmdplugin_t (PLMD::molfile) |
| ExceptionDebug (PLMD) |
OPESmetad_c (PLMD::opes) |
Volume (PLMD::colvar) |
| Plumed::ExceptionDebug (PLMD) |
OPESmetad_e (PLMD::opes) |
VolumeAround (PLMD::multicolvar) |
| ExceptionError (PLMD) |
Opt_Adam (PLMD::ves) |
VolumeCavity (PLMD::multicolvar) |
| Plumed::ExceptionError (PLMD) |
Opt_BachAveragedSGD (PLMD::ves) |
VolumeGradientBase (PLMD::multicolvar) |
| ExceptionTypeError (PLMD) |
Opt_Dummy (PLMD::ves) |
VolumeInCylinder (PLMD::multicolvar) |
| Plumed::ExceptionTypeError (PLMD) |
Opt_RobbinsMonroSGD (PLMD::ves) |
VolumeInEnvelope (PLMD::multicolvar) |
| ExchangePatterns (PLMD) |
OptimalRMSD (PLMD) |
VolumeInSphere (PLMD::multicolvar) |
| ExpansionCVs (PLMD::opes) |
Optimizer (PLMD::ves) |
VolumeTetrapore (PLMD::multicolvar) |
| exploration (PLMD::opes) |
Optimizer (PLMD::maze) |
|
| ExpressionProgram (PLMD::lepton) |
OptimizerBias (PLMD::maze) |
| ExpressionTreeNode (PLMD::lepton) |
FuncPathMSD::ordering (PLMD::function) |
Stopwatch::Watch (PLMD) |
| ExtendedLagrangian (PLMD::bias) |
OrderingVessel (PLMD::vesselbase) |
WaveletGrid (PLMD::ves) |
| External (PLMD::bias) |
OrientationSphere (PLMD::crystallization) |
WeightBase (PLMD) |
| ExtraCV (PLMD::colvar) |
OutputBasisFunctions (PLMD::ves) |
WellTemperedModifer (PLMD::ves) |
|
|
OutputCluster (PLMD::adjmat) |
WhamHistogram (PLMD::analysis) |
| OutputColvarFile (PLMD::analysis) |
WhamWeights (PLMD::analysis) |
| F1dim (PLMD) |
OutputFesBias (PLMD::ves) |
WholeMolecules (PLMD::generic) |
| FakeFrame (PLMD) |
OutputPCAProjection (PLMD::dimred) |
WithCmd (PLMD) |
| FarthestPointSampling (PLMD::analysis) |
OutputPDBFile (PLMD::analysis) |
WrapAround (PLMD::generic) |
| Fccubic (PLMD::crystallization) |
OutputTargetDistribution (PLMD::ves) |
|
| FermiSwitchingFunction (PLMD::ves) |
|
| FesWeight (PLMD::ves) |
XAngles (PLMD::multicolvar) |
| IFile::Field (PLMD) |
FuncPathMSD::pairordering (PLMD::function) |
XDistances (PLMD::multicolvar) |
| OFile::Field (PLMD) |
FuncPathGeneral::pairordering (PLMD::function) |
XDR (PLMD::xdrfile) |
| FileBase::FieldBase (PLMD) |
PAMM (PLMD::pamm) |
XDR::xdr_ops (PLMD::xdrfile) |
| FileBase (PLMD) |
PammObject (PLMD::pamm) |
XDRFILE (PLMD::xdrfile) |
| FilesHandler (PLMD::function) |
ParabetaRMSD (PLMD::secondarystructure) |
XYDistances (PLMD::multicolvar) |
| FilterBetween (PLMD::multicolvar) |
ParsedExpression (PLMD::lepton) |
XYTorsion (PLMD::multicolvar) |
| FilterLess (PLMD::multicolvar) |
Parser (PLMD::lepton) |
|
| FilterMore (PLMD::multicolvar) |
ParseToken (PLMD::lepton) |
| FindContour (PLMD::gridtools) |
Path (PLMD::mapping) |
ZpathVessel (PLMD::mapping) |
| | |
1.8.17
