PLMD::ves::CoeffsMatrix Member List

This is the complete list of members for PLMD::ves::CoeffsMatrix, including all inherited members.

action_pntr_	PLMD::ves::CoeffsBase	private
activate()	PLMD::ves::CoeffsBase	inline
active	PLMD::ves::CoeffsBase	private
addToAverage(const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix
addToAverage(const CoeffsMatrix &, const unsigned int)	PLMD::ves::CoeffsMatrix
addToValue(const size_t, const size_t, const double)	PLMD::ves::CoeffsMatrix
addToValue(const std::vector< unsigned int > &, const std::vector< unsigned int > &, const double)	PLMD::ves::CoeffsMatrix
addToValues(const double)	PLMD::ves::CoeffsMatrix
addToValues(const std::vector< double > &)	PLMD::ves::CoeffsMatrix
addToValues(const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix
args_	PLMD::ves::CoeffsBase	private
averageMatrices(CoeffsMatrix &, CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	static
averageMatrices(const std::vector< CoeffsMatrix * > &)	PLMD::ves::CoeffsMatrix	static
averaging_counter	PLMD::ves::CoeffsMatrix	private
averaging_exp_decay_	PLMD::ves::CoeffsMatrix	private
basisf_	PLMD::ves::CoeffsBase	private
checkCoeffsInfo(const std::string &, const std::string &, const unsigned int, const size_t, const std::vector< unsigned int > &)	PLMD::ves::CoeffsBase
clear()	PLMD::ves::CoeffsMatrix
coeffs_descriptions_	PLMD::ves::CoeffsBase	private
coeffs_type_	PLMD::ves::CoeffsBase	private
CoeffsBase()	PLMD::ves::CoeffsBase	explicit
CoeffsBase(const std::string &, const std::vector< std::string > &, const std::vector< unsigned int > &, const bool use_iteration_counter=false)	PLMD::ves::CoeffsBase	explicit
CoeffsBase(const std::string &, std::vector< Value * > &, std::vector< BasisFunctions * > &, const bool use_iteration_counter=false)	PLMD::ves::CoeffsBase	explicit
CoeffsBase(const std::string &, std::vector< std::vector< Value * > > &, std::vector< std::vector< BasisFunctions * > > &, const bool use_iteration_counter=false, const std::string &multicoeffs_label="bias")	PLMD::ves::CoeffsBase	explicit
CoeffsMatrix(const std::string &, const std::vector< std::string > &, const std::vector< unsigned int > &, Communicator &cc, const bool diagonal=true, const bool use_iteration_counter=false)	PLMD::ves::CoeffsMatrix	explicit
CoeffsMatrix(const std::string &, std::vector< Value * > &, std::vector< BasisFunctions * > &, Communicator &cc, const bool diagonal=true, const bool use_iteration_counter=false)	PLMD::ves::CoeffsMatrix	explicit
CoeffsMatrix(const std::string &, std::vector< std::vector< Value * > > &argsv, std::vector< std::vector< BasisFunctions * > > &basisfv, Communicator &cc, const bool diagonal=true, const bool use_iteration_counter=false, const std::string &multicoeffs_label="bias")	PLMD::ves::CoeffsMatrix	explicit
CoeffsMatrix(const std::string &, CoeffsVector *, Communicator &cc, const bool diagonal=true)	PLMD::ves::CoeffsMatrix	explicit
CoeffsType enum name	PLMD::ves::CoeffsBase	private
data	PLMD::ves::CoeffsMatrix	private
data_label_	PLMD::ves::CoeffsBase	private
deactivate()	PLMD::ves::CoeffsBase	inline
diagonal_	PLMD::ves::CoeffsMatrix	private
dimension_labels_	PLMD::ves::CoeffsBase	private
field_iteration_	PLMD::ves::CoeffsBase	private
field_ncoeffs_total_	PLMD::ves::CoeffsBase	private
field_ndimensions_	PLMD::ves::CoeffsBase	private
field_shape_prefix_	PLMD::ves::CoeffsBase	private
field_time_	PLMD::ves::CoeffsBase	private
field_type_	PLMD::ves::CoeffsBase	private
Generic enum value	PLMD::ves::CoeffsBase	private
getAllCoeffsDescriptions() const	PLMD::ves::CoeffsBase	inline
getAllDimensionLabels() const	PLMD::ves::CoeffsBase	inline
getCoeffDescription(const size_t index) const	PLMD::ves::CoeffsBase	inline
getCoeffDescription(const std::vector< unsigned int > &) const	PLMD::ves::CoeffsBase	inline
getCoeffsInfoFromFile(IFile &, const bool ignore_coeffs_info=false)	PLMD::ves::CoeffsBase
getCommunicator() const	PLMD::ves::CoeffsMatrix	inline
getDataAsVector() const	PLMD::ves::CoeffsMatrix	inline
getDataLabel() const	PLMD::ves::CoeffsBase	inline
getDimensionLabel(const unsigned int) const	PLMD::ves::CoeffsBase	inline
getIndex(const std::vector< unsigned int > &) const	PLMD::ves::CoeffsBase	inline
getIndices(const size_t) const	PLMD::ves::CoeffsBase	inline
getIterationCounter() const	PLMD::ves::CoeffsBase	inline
getIterationCounterAndTimeFromFile(IFile &)	PLMD::ves::CoeffsBase	protected
getLabel() const	PLMD::ves::CoeffsBase	inline
getMatrixIndex(const size_t, const size_t) const	PLMD::ves::CoeffsMatrix
getMaxValue() const	PLMD::ves::CoeffsMatrix
getMinValue() const	PLMD::ves::CoeffsMatrix
getOutputFmt() const	PLMD::ves::CoeffsBase	inline
getPntrToAction() const	PLMD::ves::CoeffsBase	inline
getPntrToVesBias() const	PLMD::ves::CoeffsBase	inline
getSize() const	PLMD::ves::CoeffsMatrix
getTimeValue() const	PLMD::ves::CoeffsBase	inline
getType() const	PLMD::ves::CoeffsBase	inline
getTypeStr() const	PLMD::ves::CoeffsBase
getValue(const size_t, const size_t) const	PLMD::ves::CoeffsMatrix
getValue(const std::vector< unsigned int > &, const std::vector< unsigned int > &) const	PLMD::ves::CoeffsMatrix
indices_shape_	PLMD::ves::CoeffsBase	private
indicesExist(const std::vector< unsigned int > &) const	PLMD::ves::CoeffsBase
initializeIndices(const std::vector< unsigned int > &, const std::vector< std::string > &)	PLMD::ves::CoeffsBase	private
isActive() const	PLMD::ves::CoeffsBase	inline
isDiagonal() const	PLMD::ves::CoeffsMatrix
isGenericCoeffs() const	PLMD::ves::CoeffsBase	inline
isIterationCounterActive() const	PLMD::ves::CoeffsBase	inline
isLinearBasisSetCoeffs() const	PLMD::ves::CoeffsBase	inline
isMultiLinearBasisSetCoeffs() const	PLMD::ves::CoeffsBase	inline
isSymmetric() const	PLMD::ves::CoeffsMatrix
iteration_and_time_active_	PLMD::ves::CoeffsBase	private
iteration_opt	PLMD::ves::CoeffsBase	private
label_	PLMD::ves::CoeffsBase	private
LinearBasisSet enum value	PLMD::ves::CoeffsBase	private
linkAction(Action *)	PLMD::ves::CoeffsBase
linkVesBias(VesBias *)	PLMD::ves::CoeffsBase
multicoeffs_	PLMD::ves::CoeffsBase	private
multicoeffs_args_	PLMD::ves::CoeffsBase	private
multicoeffs_basisf_	PLMD::ves::CoeffsBase	private
MultiCoeffs_LinearBasisSet enum value	PLMD::ves::CoeffsBase	private
mycomm	PLMD::ves::CoeffsMatrix	private
ncoeffs_	PLMD::ves::CoeffsBase	private
ncolumns_	PLMD::ves::CoeffsMatrix	private
ndimensions_	PLMD::ves::CoeffsBase	private
nrows_	PLMD::ves::CoeffsMatrix	private
numberOfCoeffs() const	PLMD::ves::CoeffsBase	inline
numberOfDimensions() const	PLMD::ves::CoeffsBase	inline
operator()(const size_t, const size_t)	PLMD::ves::CoeffsMatrix
operator()(const size_t, const size_t) const	PLMD::ves::CoeffsMatrix
operator()(const std::vector< unsigned int > &, const std::vector< unsigned int > &)	PLMD::ves::CoeffsMatrix
operator()(const std::vector< unsigned int > &, const std::vector< unsigned int > &) const	PLMD::ves::CoeffsMatrix
operator*(const CoeffsMatrix &, const CoeffsVector &)	PLMD::ves::CoeffsMatrix	friend
operator*(const double, const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	friend
operator*(const CoeffsMatrix &, const double)	PLMD::ves::CoeffsMatrix	friend
operator*(const CoeffsMatrix &) const	PLMD::ves::CoeffsMatrix
operator*=(const double)	PLMD::ves::CoeffsMatrix
operator*=(const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix
operator+() const	PLMD::ves::CoeffsMatrix
operator+(const double, const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	friend
operator+(const CoeffsMatrix &, const double)	PLMD::ves::CoeffsMatrix	friend
operator+(const std::vector< double > &, const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	friend
operator+(const CoeffsMatrix &, const std::vector< double > &)	PLMD::ves::CoeffsMatrix	friend
operator+(const CoeffsMatrix &) const	PLMD::ves::CoeffsMatrix
operator+=(const double)	PLMD::ves::CoeffsMatrix
operator+=(const std::vector< double > &)	PLMD::ves::CoeffsMatrix
operator+=(const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix
operator-() const	PLMD::ves::CoeffsMatrix
operator-(const double, const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	friend
operator-(const CoeffsMatrix &, const double)	PLMD::ves::CoeffsMatrix	friend
operator-(const std::vector< double > &, const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	friend
operator-(const CoeffsMatrix &, const std::vector< double > &)	PLMD::ves::CoeffsMatrix	friend
operator-(const CoeffsMatrix &) const	PLMD::ves::CoeffsMatrix
operator-=(const double)	PLMD::ves::CoeffsMatrix
operator-=(const std::vector< double > &)	PLMD::ves::CoeffsMatrix
operator-=(const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix
operator=(const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	private
operator=(const double)	PLMD::ves::CoeffsMatrix
operator=(const std::vector< double > &)	PLMD::ves::CoeffsMatrix
output_fmt_	PLMD::ves::CoeffsBase	private
randomizeValuesGaussian(int)	PLMD::ves::CoeffsMatrix
reinitializeIndices(const std::vector< unsigned int > &)	PLMD::ves::CoeffsBase	private
resetAveraging()	PLMD::ves::CoeffsMatrix
resetAveragingCounter()	PLMD::ves::CoeffsMatrix	inline
resetOutputFmt()	PLMD::ves::CoeffsBase	inline
resizeIndices(const std::vector< unsigned int > &)	PLMD::ves::CoeffsBase	protected
resizeIndices(std::vector< BasisFunctions * > &)	PLMD::ves::CoeffsBase	protected
sameShape(CoeffsVector &) const	PLMD::ves::CoeffsMatrix
sameShape(CoeffsMatrix &) const	PLMD::ves::CoeffsMatrix
sameShape(CoeffsMatrix &, CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	static
sameShape(CoeffsVector &, CoeffsMatrix &)	PLMD::ves::CoeffsMatrix	static
sameShape(CoeffsMatrix &, CoeffsVector &)	PLMD::ves::CoeffsMatrix	static
PLMD::ves::CoeffsBase::sameShape(const CoeffsBase &) const	PLMD::ves::CoeffsBase	protected
scaleAllValues(const double)	PLMD::ves::CoeffsMatrix
setAllCoeffsDescriptions(const std::string &description_prefix="C")	PLMD::ves::CoeffsBase
setAllCoeffsDescriptions(const std::vector< std::string > &)	PLMD::ves::CoeffsBase
setAllDimensionLabels(const std::string &)	PLMD::ves::CoeffsBase
setAllDimensionLabels(const std::vector< std::string > &)	PLMD::ves::CoeffsBase
setAllValuesToZero()	PLMD::ves::CoeffsMatrix
setCoeffDescription(const size_t, const std::string &)	PLMD::ves::CoeffsBase
setCoeffDescription(const std::vector< unsigned int > &, const std::string &)	PLMD::ves::CoeffsBase
setDataLabel(const std::string &)	PLMD::ves::CoeffsBase
setDimensionLabel(const unsigned int, const std::string &)	PLMD::ves::CoeffsBase
setIterationCounter(const unsigned int)	PLMD::ves::CoeffsBase	inline
setIterationCounterAndTime(const unsigned int, const double)	PLMD::ves::CoeffsBase	inline
setLabel(const std::string &)	PLMD::ves::CoeffsBase
setLabels(const std::string &)	PLMD::ves::CoeffsBase
setLabels(const std::string &, const std::string &)	PLMD::ves::CoeffsBase
setOutputFmt(const std::string &ss)	PLMD::ves::CoeffsBase	inline
setTime(const double)	PLMD::ves::CoeffsBase	inline
setType(const CoeffsType coeffs_type)	PLMD::ves::CoeffsBase
setupBasisFunctionsInfo()	PLMD::ves::CoeffsBase	protected
setupExponentiallyDecayingAveraging(const unsigned int averaging_exp_decay_in)	PLMD::ves::CoeffsMatrix	inline
setupMatrix()	PLMD::ves::CoeffsMatrix	private
setValue(const size_t, const size_t, const double)	PLMD::ves::CoeffsMatrix
setValue(const std::vector< unsigned int > &, const std::vector< unsigned int > &, const double)	PLMD::ves::CoeffsMatrix
setValues(const double)	PLMD::ves::CoeffsMatrix
setValues(const std::vector< double > &)	PLMD::ves::CoeffsMatrix
setValues(const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix
shapeOfIndices() const	PLMD::ves::CoeffsBase	inline
shapeOfIndices(const unsigned int dim_index) const	PLMD::ves::CoeffsBase	inline
size_	PLMD::ves::CoeffsMatrix	private
subtractFromValues(const double)	PLMD::ves::CoeffsMatrix
subtractFromValues(const std::vector< double > &)	PLMD::ves::CoeffsMatrix
subtractFromValues(const CoeffsMatrix &)	PLMD::ves::CoeffsMatrix
sumCommMPI()	PLMD::ves::CoeffsMatrix
sumCommMPI(Communicator &)	PLMD::ves::CoeffsMatrix
sumMultiSimCommMPI(Communicator &)	PLMD::ves::CoeffsMatrix
time_md	PLMD::ves::CoeffsBase	private
turnOffExponentiallyDecayingAveraging()	PLMD::ves::CoeffsMatrix	inline
turnOffIterationCounter()	PLMD::ves::CoeffsBase	inline
turnOnIterationCounter()	PLMD::ves::CoeffsBase	inline
vesbias_pntr_	PLMD::ves::CoeffsBase	private
writeCoeffsInfoToFile(OFile &) const	PLMD::ves::CoeffsBase
writeDataDiagonalToFile(OFile &)	PLMD::ves::CoeffsMatrix	private
writeDataFullToFile(OFile &)	PLMD::ves::CoeffsMatrix	private
writeDataToFile(OFile &)	PLMD::ves::CoeffsMatrix	private
writeHeaderToFile(OFile &)	PLMD::ves::CoeffsMatrix	private
writeIterationCounterAndTimeToFile(OFile &) const	PLMD::ves::CoeffsBase	protected
writeMatrixInfoToFile(OFile &)	PLMD::ves::CoeffsMatrix	private
writeTimeInfoToFile(OFile &, const double) const	PLMD::ves::CoeffsBase
writeToFile(OFile &)	PLMD::ves::CoeffsMatrix
writeToFile(const std::string &, const bool append_file=false, Action *action_pntr=NULL)	PLMD::ves::CoeffsMatrix
~CoeffsBase()	PLMD::ves::CoeffsBase
~CoeffsMatrix()	PLMD::ves::CoeffsMatrix