ActionWithInputGrid class | PLMD::gridtools::GridVessel | friend |
activateThesePoints(const std::vector< bool > &to_activate) | PLMD::gridtools::GridVessel | |
active | PLMD::gridtools::GridVessel | protected |
addDataElement(const unsigned &myelem, const double &value) | PLMD::vesselbase::AveragingVessel | inlineprotected |
addToGridElement(const unsigned &ipoint, const unsigned &jelement, const double &value) | PLMD::gridtools::GridVessel | |
applyForce(std::vector< double > &fforces) | PLMD::gridtools::GridVessel | virtual |
arg_names | PLMD::gridtools::GridVessel | protected |
AveragingVessel(const vesselbase::VesselOptions &) | PLMD::vesselbase::AveragingVessel | explicit |
bounds_set | PLMD::gridtools::GridVessel | private |
bufstart | PLMD::vesselbase::Vessel | protected |
calculate(const unsigned ¤t, MultiValue &myvals, std::vector< double > &buffer, std::vector< unsigned > &der_list) const | PLMD::gridtools::GridVessel | virtual |
checkRead() | PLMD::vesselbase::Vessel | |
clear() | PLMD::vesselbase::AveragingVessel | virtual |
convertIndexToIndices(const unsigned &index, const std::vector< unsigned > &nnbin, std::vector< unsigned > &indices) const | PLMD::gridtools::GridVessel | |
cube_units | PLMD::gridtools::GridVessel | private |
currentGridPoint | PLMD::gridtools::GridVessel | private |
description() | PLMD::gridtools::GridVessel | virtual |
dimension | PLMD::gridtools::GridVessel | protected |
DumpGrid class | PLMD::gridtools::GridVessel | friend |
dx | PLMD::gridtools::GridVessel | protected |
error(const std::string &errmsg) | PLMD::vesselbase::Vessel | protected |
fib_increment | PLMD::gridtools::GridVessel | private |
fib_nlist | PLMD::gridtools::GridVessel | private |
fib_offset | PLMD::gridtools::GridVessel | private |
fib_shift | PLMD::gridtools::GridVessel | private |
fibonacci enum value | PLMD::gridtools::GridVessel | private |
finalForces | PLMD::gridtools::GridVessel | private |
finish(const std::vector< double > &buffer) | PLMD::gridtools::GridVessel | virtual |
flat enum value | PLMD::gridtools::GridVessel | private |
forces | PLMD::gridtools::GridVessel | protected |
foundprint | PLMD::gridtools::GridVessel | private |
getAction() const | PLMD::vesselbase::Vessel | inlineprotected |
getAllInput() | PLMD::vesselbase::Vessel | protected |
getCellVolume() const | PLMD::gridtools::GridVessel | inline |
getComponentName(const unsigned &i) const | PLMD::gridtools::GridVessel | inline |
getCubeUnits() const | PLMD::gridtools::GridVessel | |
getDataElement(const unsigned &myelem) const | PLMD::vesselbase::AveragingVessel | inlineprotected |
getDimension() const | PLMD::gridtools::GridVessel | inline |
getFibonacciCoordinates(const unsigned &ipoint, std::vector< double > &x) const | PLMD::gridtools::GridVessel | protected |
getFibonacciCutoff() const | PLMD::gridtools::GridVessel | inlinevirtual |
getFibonacciIndex(const std::vector< double > &p) const | PLMD::gridtools::GridVessel | protected |
getFinalForces(const std::vector< double > &buffer, std::vector< double > &finalForces) | PLMD::gridtools::GridVessel | inlinevirtual |
getFlatGridCoordinates(const unsigned &ipoint, std::vector< unsigned > &tindices, std::vector< double > &x) const | PLMD::gridtools::GridVessel | protected |
getGridElement(const std::vector< unsigned > &, const unsigned &) const | PLMD::gridtools::GridVessel | |
getGridElement(const unsigned &, const unsigned &) const | PLMD::gridtools::GridVessel | virtual |
getGridExtent(const unsigned &i) const | PLMD::gridtools::GridVessel | inline |
getGridPointCoordinates(const unsigned &, std::vector< double > &) const | PLMD::gridtools::GridVessel | |
getGridPointCoordinates(const unsigned &, std::vector< unsigned > &, std::vector< double > &) const | PLMD::gridtools::GridVessel | |
getGridSpacing() const | PLMD::gridtools::GridVessel | inline |
getIndex(const std::vector< double > &p) const | PLMD::gridtools::GridVessel | protected |
getIndex(const std::vector< unsigned > &indices) const | PLMD::gridtools::GridVessel | |
getIndices(const unsigned &index, std::vector< unsigned > &indices) const | PLMD::gridtools::GridVessel | |
getIndices(const std::vector< double > &point, std::vector< unsigned > &indices) const | PLMD::gridtools::GridVessel | |
getInputString() const | PLMD::gridtools::GridVessel | |
getLabel() const | PLMD::vesselbase::Vessel | |
getMax() const | PLMD::gridtools::GridVessel | |
getMin() const | PLMD::gridtools::GridVessel | |
getName() const | PLMD::vesselbase::Vessel | |
getNbin() const | PLMD::gridtools::GridVessel | |
getNeighbors(const std::vector< double > &pp, const std::vector< unsigned > &nneigh, unsigned &num_neighbours, std::vector< unsigned > &neighbors) const | PLMD::gridtools::GridVessel | |
getNeighbors(const std::vector< unsigned > &indices, const std::vector< unsigned > &nneigh, unsigned &num_neighbors, std::vector< unsigned > &neighbors) const | PLMD::gridtools::GridVessel | |
getNLTolerance() const | PLMD::vesselbase::Vessel | inlineprotected |
getNorm() const | PLMD::vesselbase::AveragingVessel | inline |
getNumberOfBufferPoints() const | PLMD::gridtools::GridVessel | inlinevirtual |
getNumberOfComponents() const | PLMD::gridtools::GridVessel | inlinevirtual |
getNumberOfPoints() const | PLMD::gridtools::GridVessel | inline |
getNumberOfQuantities() const | PLMD::gridtools::GridVessel | inline |
getNumericalLabel() const | PLMD::vesselbase::Vessel | inlineprotected |
getSizeOfBuffer() const | PLMD::vesselbase::Vessel | inlineprotected |
getSplineNeighbors(const unsigned &mybox, unsigned &nneighbors, std::vector< unsigned > &mysneigh) const | PLMD::gridtools::GridVessel | |
getStride() const | PLMD::gridtools::GridVessel | inline |
getTolerance() const | PLMD::vesselbase::Vessel | inlineprotected |
getType() const | PLMD::gridtools::GridVessel | inline |
getValueAndDerivatives(const std::vector< double > &x, const unsigned &ind, std::vector< double > &der) const | PLMD::gridtools::GridVessel | |
golden | PLMD::gridtools::GridVessel | private |
GridVessel(const vesselbase::VesselOptions &) | PLMD::gridtools::GridVessel | explicit |
gtype | PLMD::gridtools::GridVessel | private |
igolden | PLMD::gridtools::GridVessel | private |
inactive(const unsigned &ip) const | PLMD::gridtools::GridVessel | inline |
isPeriodic(const unsigned &i) const | PLMD::gridtools::GridVessel | inline |
log_golden2 | PLMD::gridtools::GridVessel | private |
max | PLMD::gridtools::GridVessel | private |
min | PLMD::gridtools::GridVessel | private |
nbin | PLMD::gridtools::GridVessel | private |
noAverage() const | PLMD::vesselbase::AveragingVessel | inlineprotected |
noderiv | PLMD::gridtools::GridVessel | protected |
noDerivatives() const | PLMD::gridtools::GridVessel | inline |
nper | PLMD::gridtools::GridVessel | protected |
npoints | PLMD::gridtools::GridVessel | private |
parse(const std::string &key, T &t) | PLMD::vesselbase::Vessel | protected |
parseFlag(const std::string &key, bool &t) | PLMD::vesselbase::Vessel | protected |
parseVector(const std::string &key, std::vector< T > &t) | PLMD::vesselbase::Vessel | protected |
pbc | PLMD::gridtools::GridVessel | protected |
prepare() | PLMD::vesselbase::Vessel | inlinevirtual |
registerKeywords(Keywords &keys) | PLMD::gridtools::GridVessel | static |
reset() | PLMD::vesselbase::AveragingVessel | virtual |
resize() | PLMD::gridtools::GridVessel | virtual |
resizeBuffer(const unsigned &n) | PLMD::vesselbase::Vessel | inlineprotected |
root5 | PLMD::gridtools::GridVessel | private |
setBounds(const std::vector< std::string > &smin, const std::vector< std::string > &smax, const std::vector< unsigned > &nbins, const std::vector< double > &spacing) | PLMD::gridtools::GridVessel | virtual |
setBufferStart(unsigned &start) | PLMD::vesselbase::Vessel | inlinevirtual |
setCubeUnits(const double &units) | PLMD::gridtools::GridVessel | |
setDataElement(const unsigned &myelem, const double &value) | PLMD::vesselbase::AveragingVessel | inlineprotected |
setDataSize(const unsigned &size) | PLMD::vesselbase::AveragingVessel | protected |
setForce(const std::vector< double > &inforces) | PLMD::gridtools::GridVessel | |
setGridElement(const unsigned &, const unsigned &, const double &) | PLMD::gridtools::GridVessel | |
setGridElement(const std::vector< unsigned > &, const unsigned &, const double &) | PLMD::gridtools::GridVessel | |
setNoDerivatives() | PLMD::gridtools::GridVessel | |
setNorm(const double &snorm) | PLMD::vesselbase::AveragingVessel | inline |
setupFibonacciGrid(const unsigned &np) | PLMD::gridtools::GridVessel | |
setValueAndDerivatives(const unsigned &, const unsigned &, const double &, const std::vector< double > &) | PLMD::gridtools::GridVessel | |
str_max | PLMD::gridtools::GridVessel | protected |
str_min | PLMD::gridtools::GridVessel | protected |
stride | PLMD::gridtools::GridVessel | private |
transformDerivatives(const unsigned ¤t, MultiValue &myvals, MultiValue &bvals) | PLMD::vesselbase::Vessel | inlinevirtual |
transformName(const std::string &name) | PLMD::vesselbase::Vessel | static |
Vessel(const VesselOptions &da) | PLMD::vesselbase::Vessel | explicit |
wasforced | PLMD::gridtools::GridVessel | protected |
wasForced() const | PLMD::gridtools::GridVessel | |
wasreset() const | PLMD::vesselbase::AveragingVessel | |
~Vessel() | PLMD::vesselbase::Vessel | inlinevirtual |