PLMD::generic::WrapAround Member List

This is the complete list of members for PLMD::generic::WrapAround, including all inherited members.

Action(const ActionOptions &)	PLMD::Action	explicit
ActionAtomistic(const ActionOptions &ao)	PLMD::ActionAtomistic	explicit
ActionPilot(const ActionOptions &)	PLMD::ActionPilot	explicit
activate()	PLMD::Action	virtual
addDependency(Action *)	PLMD::Action
allowToAccessGlobalForces()	PLMD::ActionAtomistic	inline
apply()	PLMD::generic::WrapAround	inlinevirtual
applyForces()	PLMD::ActionAtomistic
atoms	PLMD::generic::WrapAround	private
beforeUpdate()	PLMD::Action	inlinevirtual
calculate()	PLMD::generic::WrapAround	virtual
calculateAtomicNumericalDerivatives(ActionWithValue *a, const unsigned &startnum)	PLMD::ActionAtomistic
calculateFromPDB(const PDB &)	PLMD::Action
PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::Action	virtual
PLMD::ActionAtomistic::calculateNumericalDerivatives(ActionWithValue *a=NULL)	PLMD::ActionAtomistic	virtual
changeBox(const Tensor &newbox)	PLMD::ActionAtomistic
checkNeedsGradients() const	PLMD::Action	inlinevirtual
checkNumericalDerivatives() const	PLMD::Action	inlinevirtual
checkRead()	PLMD::Action
checkUpdate() const	PLMD::Action
cite(const std::string &s)	PLMD::Action
clearDependencies()	PLMD::Action
clearOptions()	PLMD::Action	virtual
clearOutputForces()	PLMD::ActionAtomistic
comm	PLMD::Action
deactivate()	PLMD::Action	inlinevirtual
Dependencies typedef	PLMD::Action
doNotForce()	PLMD::ActionAtomistic	inline
doNotRetrieve()	PLMD::ActionAtomistic	inline
error(const std::string &msg) const	PLMD::Action
exit(int c=0)	PLMD::Action
fclose(FILE *fp)	PLMD::Action
fflush()	PLMD::Action
files	PLMD::Action
fopen(const char *path, const char *mode)	PLMD::Action
getAbsoluteIndex(int i) const	PLMD::ActionAtomistic	inline
getAbsoluteIndexes() const	PLMD::ActionAtomistic	inlinevirtual
getBox() const	PLMD::ActionAtomistic	inline
getCharge(int i) const	PLMD::ActionAtomistic	inline
getCPT() const	PLMD::Action
getDependencies() const	PLMD::Action	inline
getDocumentation() const	PLMD::Action	virtual
getEnergy() const	PLMD::ActionAtomistic	inline
getExchangeStep() const	PLMD::Action
getGlobalPosition(AtomNumber) const	PLMD::ActionAtomistic	inline
getKeyword(const std::string &key)	PLMD::Action
getLabel() const	PLMD::Action	inline
getMass(int i) const	PLMD::ActionAtomistic	inline
getName() const	PLMD::Action	inline
getNumberOfAtoms() const	PLMD::ActionAtomistic	inline
getPbc() const	PLMD::ActionAtomistic	inline
getPosition(int) const	PLMD::ActionAtomistic	inline
getPositions() const	PLMD::ActionAtomistic	inline
getRestart() const	PLMD::Action	inline
getStep() const	PLMD::Action
getStride() const	PLMD::ActionPilot
getTime() const	PLMD::Action
getTimeStep() const	PLMD::Action
getTotAtoms() const	PLMD::ActionAtomistic	inline
getUnique() const	PLMD::ActionAtomistic	inline
getUniqueLocal() const	PLMD::ActionAtomistic	inline
groupby	PLMD::generic::WrapAround	private
interpretAtomList(std::vector< std::string > &strings, std::vector< AtomNumber > &t)	PLMD::ActionAtomistic
isActive() const	PLMD::Action	inline
isOptionOn(const std::string &s) const	PLMD::Action	inline
keywords	PLMD::Action
PLMD::lockRequests()	PLMD::Action	inlinevirtual
PLMD::ActionAtomistic::lockRequests()	PLMD::ActionAtomistic	inlinevirtual
log	PLMD::Action
makeWhole()	PLMD::ActionAtomistic
modifyForceOnEnergy()	PLMD::ActionAtomistic	inline
modifyForceOnExtraCV()	PLMD::ActionAtomistic	inline
modifyForces()	PLMD::ActionAtomistic	inline
modifyGlobalForce(AtomNumber)	PLMD::ActionAtomistic	inline
modifyGlobalPbc()	PLMD::ActionAtomistic	inline
modifyGlobalPosition(AtomNumber)	PLMD::ActionAtomistic	inline
modifyGlobalVirial()	PLMD::ActionAtomistic	inline
modifyVirial()	PLMD::ActionAtomistic	inline
multi_sim_comm	PLMD::Action
onStep() const	PLMD::ActionPilot	virtual
parse(const std::string &key, T &t)	PLMD::Action
parseAtomList(const std::string &key, std::vector< AtomNumber > &t)	PLMD::ActionAtomistic
parseAtomList(const std::string &key, const int num, std::vector< AtomNumber > &t)	PLMD::ActionAtomistic
parseFlag(const std::string &key, bool &t)	PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)	PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)	PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)	PLMD::Action
pbcApply(std::vector< Vector > &dlist, unsigned max_index=0) const	PLMD::ActionAtomistic
pbcDistance(const Vector &, const Vector &) const	PLMD::ActionAtomistic
plumed	PLMD::Action
prepare()	PLMD::Action	virtual
PLMD::readAtomsFromPDB(const PDB &)	PLMD::Action	inlinevirtual
PLMD::ActionAtomistic::readAtomsFromPDB(const PDB &pdb)	PLMD::ActionAtomistic	virtual
reference	PLMD::generic::WrapAround	private
registerKeywords(Keywords &keys)	PLMD::generic::WrapAround	static
requestAtoms(const std::vector< AtomNumber > &a, const bool clearDep=true)	PLMD::ActionAtomistic
retrieveAtoms()	PLMD::ActionAtomistic	virtual
runFinalJobs()	PLMD::Action	inlinevirtual
setExtraCV(const std::string &name)	PLMD::ActionAtomistic	inlineprotected
setForcesOnAtoms(const std::vector< double > &forcesToApply, unsigned ind=0)	PLMD::ActionAtomistic
setOption(const std::string &s)	PLMD::Action	virtual
setStride(const int &n)	PLMD::ActionPilot
PLMD::unlockRequests()	PLMD::Action	inlinevirtual
PLMD::ActionAtomistic::unlockRequests()	PLMD::ActionAtomistic	inlinevirtual
update()	PLMD::Action	inlinevirtual
updateUniqueLocal()	PLMD::ActionAtomistic
warning(const std::string &msg)	PLMD::Action
WrapAround(const ActionOptions &ao)	PLMD::generic::WrapAround	explicit
~Action()	PLMD::Action	virtual
~ActionAtomistic()	PLMD::ActionAtomistic