Here is a list of all class members with links to the classes they belong to:

- t -

• t : PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Const_row , PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Row , PLMD::molfile::trx_hdr , PLMD::vesselbase::ActionWithAveraging
• t_chi1 : PLMD::isdb::CS2Backbone::Fragment
• t_phi : PLMD::isdb::CS2Backbone::Fragment
• t_psi : PLMD::isdb::CS2Backbone::Fragment
• TAN : PLMD::lepton::Operation
• Tan() : PLMD::lepton::Operation
• TANH : PLMD::lepton::Operation
• Tanh() : PLMD::lepton::Operation
• tanh : PLMD::SwitchingFunction
• Target() : PLMD::function::Target
• target : PLMD::function::Target , PLMD::lepton::CompiledExpression , PLMD::multicolvar::AlphaBeta , PLMD::TargetDist
• target_coupling_ : PLMD::eds::EDS
• TargetDist() : PLMD::TargetDist
• targetdist_averages_filename_ : PLMD::ves::VesBias
• targetdist_averages_output_fmt_ : PLMD::ves::Optimizer
• targetdist_averages_pntr_ : PLMD::ves::LinearBasisSetExpansion
• targetdist_averages_pntrs_ : PLMD::ves::Optimizer , PLMD::ves::VesBias
• targetdist_averages_wstride_ : PLMD::ves::Optimizer
• targetdist_averagesOFiles_ : PLMD::ves::Optimizer
• targetdist_file_fmt_ : PLMD::ves::VesBias
• targetdist_filename_ : PLMD::ves::VesBias
• targetdist_grid_label_ : PLMD::ves::LinearBasisSetExpansion
• targetdist_grid_pntr_ : PLMD::ves::LinearBasisSetExpansion , PLMD::ves::TargetDistribution
• targetdist_modifer_pntrs_ : PLMD::ves::TargetDistribution
• targetdist_output_active_ : PLMD::ves::Optimizer
• targetdist_output_stride_ : PLMD::ves::Optimizer
• targetdist_pntr_ : PLMD::ves::LinearBasisSetExpansion
• targetdist_pntrs_ : PLMD::ves::VesBias
• targetdist_proj_output_active_ : PLMD::ves::Optimizer
• targetdist_proj_output_stride_ : PLMD::ves::Optimizer
• targetdist_restart_file_fmt_ : PLMD::ves::VesBias
• TargetDistAverages() : PLMD::ves::LinearBasisSetExpansion , PLMD::ves::Optimizer , PLMD::ves::VesBias
• targetDistGrid() : PLMD::ves::TargetDistribution
• TargetDistribution() : PLMD::ves::TargetDistribution
• TargetDistType : PLMD::ves::TargetDistribution
• targetfilename_ : PLMD::bias::MetaD
• TargetGrid_ : PLMD::bias::MetaD
• targets : PLMD::DRMSD
• taskFlags : PLMD::vesselbase::ActionWithVessel
• taskIsCurrentlyActive() : PLMD::vesselbase::ActionWithVessel
• tau : PLMD::bias::ExtendedLagrangian , PLMD::bias::MaxEnt
• TD_Chi() : PLMD::ves::TD_Chi
• TD_ChiSquared() : PLMD::ves::TD_ChiSquared
• TD_Custom() : PLMD::ves::TD_Custom
• TD_Exponential() : PLMD::ves::TD_Exponential
• TD_ExponentiallyModifiedGaussian() : PLMD::ves::TD_ExponentiallyModifiedGaussian
• TD_Gaussian() : PLMD::ves::TD_Gaussian
• TD_GeneralizedExtremeValue() : PLMD::ves::TD_GeneralizedExtremeValue
• TD_GeneralizedNormal() : PLMD::ves::TD_GeneralizedNormal
• TD_Grid() : PLMD::ves::TD_Grid
• TD_LinearCombination() : PLMD::ves::TD_LinearCombination
• TD_ProductCombination() : PLMD::ves::TD_ProductCombination
• TD_ProductDistribution() : PLMD::ves::TD_ProductDistribution
• TD_Uniform() : PLMD::ves::TD_Uniform
• TD_VonMises() : PLMD::ves::TD_VonMises
• TD_WellTempered() : PLMD::ves::TD_WellTempered
• temp : PLMD::bias::ABMD , PLMD::drr::UIestimator::n_matrix , PLMD::drr::UIestimator::n_vector< T >
• temperature : PLMD::colvar::Dimer , PLMD::drr::UIestimator::UIestimator
• temperHeight() : PLMD::bias::MetaD
• tempering_names_ : PLMD::bias::MetaD
• TemperingSpecs() : PLMD::bias::MetaD::TemperingSpecs
• Template() : PLMD::colvar::Template
• tend : PLMD::bias::MaxEnt
• TensorChecks() : PLMD::TensorChecks
• TensorGeneric() : PLMD::TensorGeneric< n, m >
• Tetrahedral() : PLMD::crystallization::Tetrahedral
• text : PLMD::lepton::ParseToken
• thematrix : PLMD::adjmat::Sprint
• thermostat() : PLMD::cltools::SimpleMD
• THR : PLMD::isdb::CS2Backbone
• threadSafe() : PLMD::analysis::Histogram , PLMD::multicolvar::MultiColvarBase , PLMD::vesselbase::ActionWithVessel
• threecells : PLMD::multicolvar::MultiColvarBase
• threshold : PLMD::bias::MetaD::TemperingSpecs
• threshold_switch : PLMD::adjmat::TopologyMatrix
• Time() : PLMD::generic::Time
• time : PLMD::molfile::md_ts , PLMD::Units
• time_md : PLMD::ves::CoeffsBase
• timers : PLMD::vesselbase::ActionWithVessel
• timestep : PLMD::Atoms
• timeString : PLMD::Units
• timeval : PLMD::molfile::md_header
• TINY : PLMD::Minimise1DBrent< FCLASS >
• title : PLMD::molfile::md_header , PLMD::molfile::molfile_metadata_t , PLMD::molfile::trx_hdr
• tmom : PLMD::crystallization::Steinhardt
• tmp_atoms : PLMD::MultiValue
• tmp_index : PLMD::vesselbase::StoreDataVessel
• tmp_p : PLMD::multicolvar::BridgedMultiColvarFunction
• tmpder : PLMD::MultiValue
• tmpforces : PLMD::multicolvar::VolumeGradientBase , PLMD::vesselbase::ActionWithVessel
• tmpval : PLMD::MultiValue
• to : PLMD::bias::ABMD
• toFortran() : PLMD::Plumed
• tokenize() : PLMD::lepton::Parser
• tol : PLMD::Brent1DRootSearch< FCLASS > , PLMD::Minimise1DBrent< FCLASS >
• tolerance : PLMD::mapping::AdaptivePath , PLMD::vesselbase::ActionWithVessel
• top_size : PLMD::molfile::trx_hdr
• TopologyMatrix() : PLMD::adjmat::TopologyMatrix
• Torsion() : PLMD::colvar::Torsion
• Torsions() : PLMD::multicolvar::Torsions
• toString() : PLMD::Keywords::KeyType , PLMD::Random
• TOT : PLMD::colvar::Gyration
• tot_size : PLMD::isdb::NOE , PLMD::isdb::PRE
• tot_work : PLMD::bias::MovingRestraint
• TOTAL : PLMD::ExchangePatterns
• total : PLMD::Stopwatch::Watch
• totalcharge : PLMD::molfile::molfile_qm_sysinfo_t
• totalNumberOfCoeffs() : PLMD::ves::VesBias
• totalWork : PLMD::bias::MaxEnt
• TRACE : PLMD::colvar::Gyration
• trace() : PLMD::Exception
• transf_deriv_expression_ : PLMD::ves::BF_Custom
• transf_value_expression_ : PLMD::ves::BF_Custom
• transf_variable_str_ : PLMD::ves::BF_Custom
• transformBridgedDerivatives() : PLMD::manyrestraints::ManyRestraintsBase , PLMD::multicolvar::BridgedMultiColvarFunction , PLMD::vesselbase::ActionWithVessel
• transformDerivatives() : PLMD::vesselbase::BridgeVessel , PLMD::vesselbase::Vessel
• transformHD() : PLMD::mapping::AdaptivePath , PLMD::mapping::Mapping , PLMD::mapping::PathBase
• transformName() : PLMD::vesselbase::Vessel
• transition_bias_ : PLMD::bias::MetaD
• transitionwells_ : PLMD::bias::MetaD
• translateArgument() : PLMD::ves::BasisFunctions
• transpose : PLMD::Matrix< T > , PLMD::TensorGeneric< n, m >
• triangular : PLMD::HistogramBead , PLMD::KernelFunctions
• trig_metric : PLMD::ReferenceArguments
• TrigonometricPathVessel : PLMD::mapping::Mapping , PLMD::mapping::TrigonometricPathVessel
• trim() : PLMD::lepton::Parser , PLMD::Tools
• trimComments() : PLMD::Tools
• trimer : PLMD::colvar::Dimer
• TRP : PLMD::isdb::CS2Backbone
• trx : PLMD::molfile::md_file
• tstart : PLMD::bias::MaxEnt
• tt : PLMD::ReferenceConfigurationOptions
• tt_specs_ : PLMD::bias::MetaD
• turnOffCoeffsOutputFiles() : PLMD::ves::Optimizer
• turnOffExponentiallyDecayingAveraging() : PLMD::ves::CoeffsMatrix , PLMD::ves::CoeffsVector
• turnOffHessian() : PLMD::ves::Optimizer
• turnOffIterationCounter() : PLMD::ves::CoeffsBase
• turnOnDerivatives() : PLMD::ActionWithValue , PLMD::adjmat::ClusterAnalysisBase , PLMD::adjmat::ClusterDiameter , PLMD::adjmat::ClusteringBase , PLMD::adjmat::ClusterSize , PLMD::analysis::Histogram , PLMD::eds::EDS , PLMD::generic::Read , PLMD::gridtools::ActionWithGrid , PLMD::gridtools::ActionWithIntegral , PLMD::isdb::MetainferenceBase , PLMD::mapping::Mapping , PLMD::multicolvar::BridgedMultiColvarFunction , PLMD::multicolvar::MultiColvarBase , PLMD::secondarystructure::SecondaryStructureRMSD
• turnOnHessian() : PLMD::ves::Optimizer
• turnOnIterationCounter() : PLMD::ves::CoeffsBase
• twolists_ : PLMD::NeighborList
• type : PLMD::bias::MaxEnt , PLMD::Communicator::ConstData , PLMD::Communicator::Data , PLMD::FlexibleBin , PLMD::generic::DumpAtoms , PLMD::generic::FitToTemplate , PLMD::generic::ResetCell , PLMD::HistogramBead , PLMD::isdb::CS2Backbone
• Type : PLMD::lepton::ParseToken
• type : PLMD::lepton::ParseToken , PLMD::molfile::molfile_atom_t , PLMD::molfile::molfile_graphics_t , PLMD::molfile::molfile_qm_wavefunction_t , PLMD::Pbc , PLMD::SwitchingFunction , PLMD::ves::FermiSwitchingFunction
• type_ : PLMD::ves::BasisFunctions , PLMD::ves::Optimizer , PLMD::ves::TargetDistribution
• types : PLMD::Keywords
• TYR : PLMD::isdb::CS2Backbone