- t -
- Tan()
: PLMD::lepton::Operation
- Tanh()
: PLMD::lepton::Operation
- Target()
: PLMD::function::Target
- TargetDist()
: PLMD::TargetDist
- TargetDistAverages()
: PLMD::ves::LinearBasisSetExpansion
, PLMD::ves::Optimizer
, PLMD::ves::VesBias
- targetDistGrid()
: PLMD::ves::TargetDistribution
- TargetDistribution()
: PLMD::ves::TargetDistribution
- taskIsCurrentlyActive()
: PLMD::vesselbase::ActionWithVessel
- TD_Chi()
: PLMD::ves::TD_Chi
- TD_ChiSquared()
: PLMD::ves::TD_ChiSquared
- TD_Custom()
: PLMD::ves::TD_Custom
- TD_Exponential()
: PLMD::ves::TD_Exponential
- TD_ExponentiallyModifiedGaussian()
: PLMD::ves::TD_ExponentiallyModifiedGaussian
- TD_Gaussian()
: PLMD::ves::TD_Gaussian
- TD_GeneralizedExtremeValue()
: PLMD::ves::TD_GeneralizedExtremeValue
- TD_GeneralizedNormal()
: PLMD::ves::TD_GeneralizedNormal
- TD_Grid()
: PLMD::ves::TD_Grid
- TD_LinearCombination()
: PLMD::ves::TD_LinearCombination
- TD_ProductCombination()
: PLMD::ves::TD_ProductCombination
- TD_ProductDistribution()
: PLMD::ves::TD_ProductDistribution
- TD_Uniform()
: PLMD::ves::TD_Uniform
- TD_VonMises()
: PLMD::ves::TD_VonMises
- TD_WellTempered()
: PLMD::ves::TD_WellTempered
- temperHeight()
: PLMD::bias::MetaD
- TemperingSpecs()
: PLMD::bias::MetaD::TemperingSpecs
- Template()
: PLMD::colvar::Template
- TensorChecks()
: PLMD::TensorChecks
- TensorGeneric()
: PLMD::TensorGeneric< n, m >
- Tetrahedral()
: PLMD::crystallization::Tetrahedral
- thermostat()
: PLMD::cltools::SimpleMD
- threadSafe()
: PLMD::analysis::Histogram
, PLMD::multicolvar::MultiColvarBase
, PLMD::vesselbase::ActionWithVessel
- Time()
: PLMD::generic::Time
- toFortran()
: PLMD::Plumed
- tokenize()
: PLMD::lepton::Parser
- TopologyMatrix()
: PLMD::adjmat::TopologyMatrix
- Torsion()
: PLMD::colvar::Torsion
- Torsions()
: PLMD::multicolvar::Torsions
- toString()
: PLMD::Keywords::KeyType
, PLMD::Random
- totalNumberOfCoeffs()
: PLMD::ves::VesBias
- trace()
: PLMD::Exception
- transformBridgedDerivatives()
: PLMD::manyrestraints::ManyRestraintsBase
, PLMD::multicolvar::BridgedMultiColvarFunction
, PLMD::vesselbase::ActionWithVessel
- transformDerivatives()
: PLMD::vesselbase::BridgeVessel
, PLMD::vesselbase::Vessel
- transformHD()
: PLMD::mapping::AdaptivePath
, PLMD::mapping::Mapping
, PLMD::mapping::PathBase
- transformName()
: PLMD::vesselbase::Vessel
- translateArgument()
: PLMD::ves::BasisFunctions
- transpose()
: PLMD::TensorGeneric< n, m >
- TrigonometricPathVessel()
: PLMD::mapping::TrigonometricPathVessel
- trim()
: PLMD::lepton::Parser
, PLMD::Tools
- trimComments()
: PLMD::Tools
- turnOffCoeffsOutputFiles()
: PLMD::ves::Optimizer
- turnOffExponentiallyDecayingAveraging()
: PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- turnOffHessian()
: PLMD::ves::Optimizer
- turnOffIterationCounter()
: PLMD::ves::CoeffsBase
- turnOnDerivatives()
: PLMD::ActionWithValue
, PLMD::adjmat::ClusterAnalysisBase
, PLMD::adjmat::ClusterDiameter
, PLMD::adjmat::ClusteringBase
, PLMD::adjmat::ClusterSize
, PLMD::analysis::Histogram
, PLMD::eds::EDS
, PLMD::generic::Read
, PLMD::gridtools::ActionWithGrid
, PLMD::gridtools::ActionWithIntegral
, PLMD::isdb::MetainferenceBase
, PLMD::mapping::Mapping
, PLMD::multicolvar::BridgedMultiColvarFunction
, PLMD::multicolvar::MultiColvarBase
, PLMD::secondarystructure::SecondaryStructureRMSD
- turnOnHessian()
: PLMD::ves::Optimizer
- turnOnIterationCounter()
: PLMD::ves::CoeffsBase