- o -
- OFile()
: PLMD::OFile
- onStep()
: PLMD::ActionPilot
, PLMD::gridtools::ConvertToFES
- open()
: PLMD::FileBase
, PLMD::IFile
, PLMD::OFile
- operator bool()
: PLMD::Atoms::DomainDecomposition
, PLMD::FileBase
- operator plumed()
: PLMD::Plumed
- operator!=()
: PLMD::lepton::ExpressionTreeNode
, PLMD::lepton::Operation
- operator()()
: PLMD::colvar::PathMSDBase::imgOrderByDist
, PLMD::colvar::PathMSDBase::imgOrderBySimilarity
, PLMD::DynamicList< T >
, PLMD::function::FuncPathMSD::ordering
, PLMD::function::FuncPathMSD::pairordering
, PLMD::Matrix< T >
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- operator*()
: PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- operator*=()
: PLMD::Matrix< T >
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- operator+()
: PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- operator+=()
: PLMD::Matrix< T >
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- operator-()
: PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- operator-=()
: PLMD::Matrix< T >
, PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
- operator/=()
: PLMD::TensorGeneric< n, m >
, PLMD::VectorGeneric< n >
- operator=()
: PLMD::Action
, PLMD::Communicator
, PLMD::DLLoader
, PLMD::FileBase
, PLMD::lepton::CompiledExpression
, PLMD::lepton::ExpressionProgram
, PLMD::lepton::ExpressionTreeNode
, PLMD::Matrix< T >
, PLMD::Plumed
, PLMD::SwitchingFunction
, PLMD::ves::CoeffsMatrix
, PLMD::ves::CoeffsVector
, PLMD::ves::FermiSwitchingFunction
- operator==()
: PLMD::lepton::ExpressionTreeNode
, PLMD::lepton::Operation
- operator[]()
: PLMD::DynamicList< T >
, PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Const_row
, PLMD::MatrixSquareBracketsAccess< T, C, I, J >
, PLMD::MatrixSquareBracketsAccess< T, C, I, J >::Row
, PLMD::VectorGeneric< n >
, PLMD::ves::CoeffsVector
- Opt_BachAveragedSGD()
: PLMD::ves::Opt_BachAveragedSGD
- Opt_Dummy()
: PLMD::ves::Opt_Dummy
- optimalAlignment()
: PLMD::RMSD
- optimalAlignment_DDistDRef()
: PLMD::RMSD
- optimalAlignment_DDistDRef_Rot_DRotDPos()
: PLMD::RMSD
- optimalAlignment_DDistDRef_Rot_DRotDPos_DRotDRef()
: PLMD::RMSD
- optimalAlignment_Fit()
: PLMD::RMSD
- optimalAlignment_PCA()
: PLMD::RMSD
- optimalAlignment_Rot()
: PLMD::RMSD
- optimalAlignment_Rot_DRotDRr01()
: PLMD::RMSD
- optimalAlignment_SOMA()
: PLMD::RMSD
- optimalAlignmentWithCloseStructure()
: PLMD::RMSD
- OptimalRMSD()
: PLMD::OptimalRMSD
- optimize()
: PLMD::lepton::ParsedExpression
- optimizeCoeffs()
: PLMD::ves::VesBias
- Optimizer()
: PLMD::ves::Optimizer
- OrderingVessel()
: PLMD::vesselbase::OrderingVessel
- OrientationSphere()
: PLMD::crystallization::OrientationSphere
- OutputBasisFunctions()
: PLMD::ves::OutputBasisFunctions
- OutputCluster()
: PLMD::adjmat::OutputCluster
- outputComponentExists()
: PLMD::Keywords
- OutputFesBias()
: PLMD::ves::OutputFesBias
- OutputTargetDistribution()
: PLMD::ves::OutputTargetDistribution