Here is a list of all class members with links to the classes they belong to:
- f -
- f
: PLMD::molfile::md_file
, PLMD::vesselbase::ActionWithAveraging
- F1dim()
: PLMD::F1dim< FCLASS >
- f_size
: PLMD::molfile::trx_hdr
- fa
: PLMD::Brent1DRootSearch< FCLASS >
, PLMD::Minimise1DBrent< FCLASS >
- fact
: PLMD::Random
- fact_md_
: PLMD::isdb::EMMI
- fadefact
: PLMD::mapping::AdaptivePath
- fake_arg_names
: PLMD::ReferenceConfiguration
- fake_atom_numbers
: PLMD::ReferenceConfiguration
- fake_der
: PLMD::F1dim< FCLASS >
- fake_metric
: PLMD::ReferenceConfiguration
- fake_refargs
: PLMD::ReferenceConfiguration
- fake_refatoms
: PLMD::ReferenceConfiguration
- FakeFrame()
: PLMD::FakeFrame
- fast
: PLMD::OptimalRMSD
- fastpow()
: PLMD::Tools
- fb
: PLMD::Brent1DRootSearch< FCLASS >
, PLMD::Minimise1DBrent< FCLASS >
- fbox
: PLMD::generic::EffectiveEnergyDrift
- fc
: PLMD::Minimise1DBrent< FCLASS >
- Fccubic()
: PLMD::crystallization::Fccubic
- fclose()
: PLMD::Action
, PLMD::PlumedMain
- fd
: PLMD::isdb::CS2Backbone::Fragment
- fermi
: PLMD::ves::FermiSwitchingFunction
- fermi_exp_max_
: PLMD::ves::FermiSwitchingFunction
- fermi_lambda_
: PLMD::ves::FermiSwitchingFunction
- FermiSwitchingFunction()
: PLMD::ves::FermiSwitchingFunction
- fes_file_fmt_
: PLMD::ves::VesBias
- fes_filename_
: PLMD::ves::VesBias
- fes_fileoutput_active_
: PLMD::ves::VesBias
- fes_grid_pntr_
: PLMD::ves::LinearBasisSetExpansion
, PLMD::ves::TargetDistribution
- fes_output_active_
: PLMD::ves::Optimizer
- fes_output_stride_
: PLMD::ves::Optimizer
- fes_var_str_
: PLMD::ves::TD_Custom
- fesGridNeeded()
: PLMD::ves::TargetDistribution
- fesproj_fileoutput_active_
: PLMD::ves::VesBias
- fesproj_output_active_
: PLMD::ves::Optimizer
- fesproj_output_stride_
: PLMD::ves::Optimizer
- FesWeight()
: PLMD::ves::FesWeight
- FF_rank
: PLMD::isdb::SAXS
- FF_value
: PLMD::isdb::SAXS
- ffict
: PLMD::bias::ExtendedLagrangian
- fflush()
: PLMD::Action
, PLMD::PlumedMain
- fframes
: PLMD::mapping::Mapping
- fib_increment
: PLMD::gridtools::GridVessel
- fib_nlist
: PLMD::gridtools::GridVessel
- fib_offset
: PLMD::gridtools::GridVessel
- fib_shift
: PLMD::gridtools::GridVessel
- fibonacci
: PLMD::gridtools::GridVessel
- fict
: PLMD::bias::ExtendedLagrangian
- fictValue
: PLMD::bias::ExtendedLagrangian
- Field()
: PLMD::IFile::Field
- field_iteration_
: PLMD::ves::CoeffsBase
- field_ncoeffs_total_
: PLMD::ves::CoeffsBase
- field_ndimensions_
: PLMD::ves::CoeffsBase
- field_shape_prefix_
: PLMD::ves::CoeffsBase
- field_time_
: PLMD::ves::CoeffsBase
- field_type_
: PLMD::ves::CoeffsBase
- FieldBase()
: PLMD::FileBase::FieldBase
- fieldChanged
: PLMD::OFile
- FieldExist()
: PLMD::IFile
- fieldFmt
: PLMD::OFile
- fields
: PLMD::IFile
, PLMD::OFile
- file
: PLMD::analysis::Committor
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpForces
, PLMD::generic::DumpMassCharge
, PLMD::generic::DumpProjections
, PLMD::generic::Print
- FileBase()
: PLMD::FileBase
- FileExist()
: PLMD::FileBase
- filename
: PLMD::adjmat::DumpGraph
, PLMD::generic::Read
, PLMD::gridtools::GridPrintingBase
- filename_extension
: PLMD::molfile::molfile_plugin_t
- filenames
: PLMD::function::FilesHandler
- filenames_have_iteration_number_
: PLMD::ves::VesBias
- filenamesIncludeIterationNumber()
: PLMD::ves::VesBias
- files
: PLMD::Action
, PLMD::PlumedMain
- FilesHandler()
: PLMD::function::FilesHandler
- filter
: PLMD::multicolvar::MultiColvarFilter
- FilterBetween()
: PLMD::multicolvar::FilterBetween
- FilterLess()
: PLMD::multicolvar::FilterLess
- FilterMore()
: PLMD::multicolvar::FilterMore
- filtersUsedAsInput()
: PLMD::multicolvar::MultiColvarBase
- final_value
: PLMD::vesselbase::ValueVessel
- finalForces
: PLMD::analysis::Histogram
, PLMD::gridtools::GridVessel
- finalize
: plumed_plumedmain_function_holder
- finalizeWeights()
: PLMD::analysis::Analysis
- finalTransform()
: PLMD::mapping::ZpathVessel
, PLMD::vesselbase::AltMin
, PLMD::vesselbase::FunctionVessel
, PLMD::vesselbase::Max
, PLMD::vesselbase::Min
- findCell()
: PLMD::LinkCells
- findContour()
: PLMD::gridtools::ContourFindingBase
- FindContour()
: PLMD::gridtools::FindContour
- FindContourSurface()
: PLMD::gridtools::FindContourSurface
- findCvsAndPeriodic()
: PLMD::cltools::CLToolSumHills
- findField()
: PLMD::IFile
, PLMD::OFile
- findKeyword()
: PLMD::Tools
- findMaximalPathMinimum()
: PLMD::Grid
- findMyCell()
: PLMD::LinkCells
- findSetOfPointsOnContour()
: PLMD::Grid
- FindSphericalContour()
: PLMD::gridtools::FindSphericalContour
- findTempIndex()
: PLMD::lepton::CompiledExpression
- finish()
: PLMD::crystallization::GradientVessel
, PLMD::crystallization::VectorMean
, PLMD::crystallization::VectorSum
, PLMD::gridtools::GridVessel
, PLMD::gridtools::HistogramOnGrid
, PLMD::mapping::TrigonometricPathVessel
, PLMD::vesselbase::AveragingVessel
, PLMD::vesselbase::BridgeVessel
, PLMD::vesselbase::FunctionVessel
, PLMD::vesselbase::Moments
, PLMD::vesselbase::OrderingVessel
, PLMD::vesselbase::ShortcutVessel
, PLMD::vesselbase::StoreDataVessel
, PLMD::vesselbase::Vessel
- finishAveraging()
: PLMD::analysis::Average
, PLMD::analysis::Histogram
, PLMD::gridtools::FindContour
, PLMD::gridtools::FindContourSurface
, PLMD::vesselbase::ActionWithAveraging
- finishComputations()
: PLMD::vesselbase::ActionWithVessel
- finished_read
: PLMD::vesselbase::Vessel
- finishMatrixSetup()
: PLMD::adjmat::AdjacencyMatrixBase
- finishPackSetup()
: PLMD::mapping::Mapping
- first
: PLMD::generic::DumpMassCharge
, PLMD::vatom::COM
- first_bias_
: PLMD::isdb::Rescale
- first_time_
: PLMD::isdb::EMMI
- firstPosClose
: PLMD::colvar::PathMSDBase
- firsttime
: PLMD::bias::ExtendedLagrangian
, PLMD::colvar::CoordinationBase
, PLMD::gridtools::FindContour
, PLMD::gridtools::FindContourSurface
- firstTime
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- firsttime
: PLMD::multicolvar::BridgedMultiColvarFunction
- firstTimeW
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- FitToTemplate()
: PLMD::generic::FitToTemplate
- fixed_stepsize_
: PLMD::ves::Optimizer
- FixedAtom()
: PLMD::vatom::FixedAtom
- fixedn
: PLMD::mapping::AdaptivePath
- fixedStepSize()
: PLMD::ves::Optimizer
- flag
: PLMD::Keywords::KeyType
- flat
: PLMD::gridtools::GridVessel
- flexbin
: PLMD::bias::MetaD
, PLMD::bias::PBMetaD
- FlexibleBin()
: PLMD::FlexibleBin
- FLOOR
: PLMD::lepton::Operation
- Floor()
: PLMD::lepton::Operation
- flush()
: PLMD::FileBase
- Flush()
: PLMD::generic::Flush
- flush()
: PLMD::OFile
- fmin
: PLMD::Minimise1DBrent< FCLASS >
- fmt
: PLMD::analysis::Committor
, PLMD::bias::MaxEnt
, PLMD::bias::MetaD
, PLMD::bias::PBMetaD
, PLMD::function::FuncSumHills
, PLMD::generic::DumpDerivatives
, PLMD::generic::DumpForces
, PLMD::generic::DumpProjections
, PLMD::generic::EffectiveEnergyDrift
, PLMD::generic::Print
, PLMD::gridtools::GridPrintingBase
, PLMD::molfile::md_file
- fmt_
: PLMD::eds::EDS
, PLMD::Grid
- fmt_gro_box
: PLMD::generic::DumpAtoms
- fmt_gro_pos
: PLMD::generic::DumpAtoms
- fmt_xyz
: PLMD::generic::DumpAtoms
, PLMD::gridtools::FindContour
, PLMD::multicolvar::DumpMultiColvar
- fmtField()
: PLMD::OFile
- fopen()
: PLMD::Action
, PLMD::PlumedMain
- force_normalization_
: PLMD::ves::TargetDistribution
- forcedNormalization()
: PLMD::ves::TargetDistribution
- forceOnEnergy
: PLMD::ActionAtomistic
, PLMD::Atoms
- forces
: PLMD::ActionAtomistic
, PLMD::Atoms
, PLMD::generic::EffectiveEnergyDrift
, PLMD::gridtools::GridVessel
, PLMD::isdb::MetainferenceBase
, PLMD::mapping::PCAVars
, PLMD::multicolvar::DistanceFromContour
- forcesHaveBeenSet
: PLMD::Atoms
- forcesToApply
: PLMD::analysis::Histogram
, PLMD::gridtools::ActionWithIntegral
, PLMD::isdb::MetainferenceBase
, PLMD::mapping::Mapping
, PLMD::mapping::PCAVars
, PLMD::multicolvar::MultiColvarBase
, PLMD::secondarystructure::SecondaryStructureRMSD
- foreignDeltaBias
: PLMD::GREX
- format()
: PLMD::Exception
- foundoneclose
: PLMD::mapping::SpathVessel
- foundprint
: PLMD::gridtools::GridVessel
- fourier_params
: PLMD::gridtools::FourierTransform
- FourierTransform()
: PLMD::gridtools::FourierTransform
- fp
: PLMD::FileBase
- fractional
: PLMD::multicolvar::MultiColvarDensity
- frag2enum()
: PLMD::isdb::CS2Backbone
- frag_relitive_index()
: PLMD::isdb::CS2Backbone
- frag_segment()
: PLMD::isdb::CS2Backbone
- Fragment()
: PLMD::isdb::CS2Backbone::Fragment
- frames
: PLMD::MultiReferenceBase
- freq
: PLMD::analysis::Analysis
- FretEfficiency()
: PLMD::isdb::FretEfficiency
- friction
: PLMD::bias::ExtendedLagrangian
- fromString()
: PLMD::Random
- ftilde_
: PLMD::isdb::Metainference
, PLMD::isdb::MetainferenceBase
- ftype
: PLMD::MultiDomainRMSD
- fullatomlist_
: PLMD::NeighborList
- fullList
: PLMD::Atoms
- fullSearch()
: PLMD::Pbc
- fullSize()
: PLMD::DynamicList< T >
- fullTaskList
: PLMD::vesselbase::ActionWithVessel
- func
: PLMD::F1dim< FCLASS >
, PLMD::function::Matheval
- funcname
: PLMD::Grid
- FuncPathMSD()
: PLMD::function::FuncPathMSD
- FuncSumHills()
: PLMD::function::FuncSumHills
- function
: PLMD::adjmat::AdjacencyMatrixVessel
- Function()
: PLMD::function::Function
- function
: PLMD::lepton::Operation
- Function
: PLMD::lepton::ParseToken
- functions
: PLMD::vesselbase::ActionWithVessel
- FunctionVessel
: PLMD::vesselbase::ActionWithVessel
, PLMD::vesselbase::FunctionVessel
- fx
: PLMD::MDAtomsTyped< T >
- fy
: PLMD::MDAtomsTyped< T >
- fz
: PLMD::MDAtomsTyped< T >
1.8.14