Line data    Source code

       1             : /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
       2             :    Copyright (c) 2013-2019 The plumed team
       3             :    (see the PEOPLE file at the root of the distribution for a list of names)
       4             : 
       5             :    See http://www.plumed.org for more information.
       6             : 
       7             :    This file is part of plumed, version 2.
       8             : 
       9             :    plumed is free software: you can redistribute it and/or modify
      10             :    it under the terms of the GNU Lesser General Public License as published by
      11             :    the Free Software Foundation, either version 3 of the License, or
      12             :    (at your option) any later version.
      13             : 
      14             :    plumed is distributed in the hope that it will be useful,
      15             :    but WITHOUT ANY WARRANTY; without even the implied warranty of
      16             :    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
      17             :    GNU Lesser General Public License for more details.
      18             : 
      19             :    You should have received a copy of the GNU Lesser General Public License
      20             :    along with plumed.  If not, see <http://www.gnu.org/licenses/>.
      21             : +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
      22             : #ifndef __PLUMED_reference_ArgumentOnlyDistance_h
      23             : #define __PLUMED_reference_ArgumentOnlyDistance_h
      24             : 
      25             : #include <vector>
      26             : #include <string>
      27             : #include "ReferenceArguments.h"
      28             : 
      29             : namespace PLMD {
      30             : 
      31             : class PDB;
      32             : class Pbc;
      33             : 
      34         951 : class ArgumentOnlyDistance : public ReferenceArguments {
      35             : public:
      36             :   explicit ArgumentOnlyDistance( const ReferenceConfigurationOptions& ro );
      37             :   void read( const PDB& pdb );
      38          80 :   bool pcaIsEnabledForThisReference() { return true; }
      39          18 :   void setupPCAStorage( ReferenceValuePack& mypack ) { mypack.switchOnPCAOption(); }
      40             :   double calc( const std::vector<Vector>& pos, const Pbc& pbc, const std::vector<Value*>& vals, const std::vector<double>& arg, ReferenceValuePack& myder, const bool& squared ) const ;
      41             :   double calculate( const std::vector<Value*>& vals, ReferenceValuePack& myder, const bool& squared ) const ;
      42             : };
      43             : 
      44             : }
      45             : #endif