Line data    Source code

       1        4806 :   word_map["setBox"]=cmd_setBox;
       2        4806 :   word_map["setPositions"]=cmd_setPositions;
       3        4806 :   word_map["setMasses"]=cmd_setMasses;
       4        4806 :   word_map["setCharges"]=cmd_setCharges;
       5        4806 :   word_map["setPositionsX"]=cmd_setPositionsX;
       6        4806 :   word_map["setPositionsY"]=cmd_setPositionsY;
       7        4806 :   word_map["setPositionsZ"]=cmd_setPositionsZ;
       8        4806 :   word_map["setVirial"]=cmd_setVirial;
       9        4806 :   word_map["setEnergy"]=cmd_setEnergy;
      10        4806 :   word_map["setForces"]=cmd_setForces;
      11        4806 :   word_map["setForcesX"]=cmd_setForcesX;
      12        4806 :   word_map["setForcesY"]=cmd_setForcesY;
      13        4806 :   word_map["setForcesZ"]=cmd_setForcesZ;
      14        4806 :   word_map["calc"]=cmd_calc;
      15        4806 :   word_map["prepareDependencies"]=cmd_prepareDependencies;
      16        4806 :   word_map["shareData"]=cmd_shareData;
      17        4806 :   word_map["prepareCalc"]=cmd_prepareCalc;
      18        4806 :   word_map["performCalc"]=cmd_performCalc;
      19        4806 :   word_map["performCalcNoUpdate"]=cmd_performCalcNoUpdate;
      20        4806 :   word_map["update"]=cmd_update;
      21        4806 :   word_map["setStep"]=cmd_setStep;
      22        4806 :   word_map["setStepLong"]=cmd_setStepLong;
      23        4806 :   word_map["setAtomsNlocal"]=cmd_setAtomsNlocal;
      24        4806 :   word_map["setAtomsGatindex"]=cmd_setAtomsGatindex;
      25        4806 :   word_map["setAtomsFGatindex"]=cmd_setAtomsFGatindex;
      26        4806 :   word_map["setAtomsContiguous"]=cmd_setAtomsContiguous;
      27        4806 :   word_map["createFullList"]=cmd_createFullList;
      28        4806 :   word_map["getFullList"]=cmd_getFullList;
      29        4806 :   word_map["clearFullList"]=cmd_clearFullList;
      30        4806 :   word_map["read"]=cmd_read;
      31        4806 :   word_map["readInputLine"]=cmd_readInputLine;
      32        4806 :   word_map["clear"]=cmd_clear;
      33        4806 :   word_map["getApiVersion"]=cmd_getApiVersion;
      34        4806 :   word_map["init"]=cmd_init;
      35        4806 :   word_map["setRealPrecision"]=cmd_setRealPrecision;
      36        4806 :   word_map["setMDLengthUnits"]=cmd_setMDLengthUnits;
      37        4806 :   word_map["setMDChargeUnits"]=cmd_setMDChargeUnits;
      38        4806 :   word_map["setMDMassUnits"]=cmd_setMDMassUnits;
      39        4806 :   word_map["setMDEnergyUnits"]=cmd_setMDEnergyUnits;
      40        4806 :   word_map["setMDTimeUnits"]=cmd_setMDTimeUnits;
      41        4806 :   word_map["setNaturalUnits"]=cmd_setNaturalUnits;
      42        4806 :   word_map["setNoVirial"]=cmd_setNoVirial;
      43        4806 :   word_map["setPlumedDat"]=cmd_setPlumedDat;
      44        4806 :   word_map["setMPIComm"]=cmd_setMPIComm;
      45        4806 :   word_map["setMPIFComm"]=cmd_setMPIFComm;
      46        4806 :   word_map["setMPImultiSimComm"]=cmd_setMPImultiSimComm;
      47        4806 :   word_map["setNatoms"]=cmd_setNatoms;
      48        4806 :   word_map["setTimestep"]=cmd_setTimestep;
      49        4806 :   word_map["setKbT"]=cmd_setKbT;
      50        4806 :   word_map["setRestart"]=cmd_setRestart;
      51        4806 :   word_map["doCheckPoint"]=cmd_doCheckPoint;
      52        4806 :   word_map["setMDEngine"]=cmd_setMDEngine;
      53        4806 :   word_map["setLog"]=cmd_setLog;
      54        4806 :   word_map["setLogFile"]=cmd_setLogFile;
      55        4806 :   word_map["setStopFlag"]=cmd_setStopFlag;
      56        4806 :   word_map["getExchangesFlag"]=cmd_getExchangesFlag;
      57        4806 :   word_map["setExchangesSeed"]=cmd_setExchangesSeed;
      58        4806 :   word_map["setNumberOfReplicas"]=cmd_setNumberOfReplicas;
      59        4806 :   word_map["getExchangesList"]=cmd_getExchangesList;
      60        4806 :   word_map["runFinalJobs"]=cmd_runFinalJobs;
      61        4806 :   word_map["isEnergyNeeded"]=cmd_isEnergyNeeded;
      62        4806 :   word_map["getBias"]=cmd_getBias;
      63        4806 :   word_map["checkAction"]=cmd_checkAction;
      64        4806 :   word_map["GREX"]=cmd_GREX;
      65        4806 :   word_map["CLTool"]=cmd_CLTool;