Line data    Source code

       1             : /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
       2             :    Copyright (c) 2011-2019 The plumed team
       3             :    (see the PEOPLE file at the root of the distribution for a list of names)
       4             : 
       5             :    See http://www.plumed.org for more information.
       6             : 
       7             :    This file is part of plumed, version 2.
       8             : 
       9             :    plumed is free software: you can redistribute it and/or modify
      10             :    it under the terms of the GNU Lesser General Public License as published by
      11             :    the Free Software Foundation, either version 3 of the License, or
      12             :    (at your option) any later version.
      13             : 
      14             :    plumed is distributed in the hope that it will be useful,
      15             :    but WITHOUT ANY WARRANTY; without even the implied warranty of
      16             :    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
      17             :    GNU Lesser General Public License for more details.
      18             : 
      19             :    You should have received a copy of the GNU Lesser General Public License
      20             :    along with plumed.  If not, see <http://www.gnu.org/licenses/>.
      21             : +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
      22             : #ifndef __PLUMED_bias_Bias_h
      23             : #define __PLUMED_bias_Bias_h
      24             : 
      25             : #include "core/ActionPilot.h"
      26             : #include "core/ActionWithValue.h"
      27             : #include "core/ActionWithArguments.h"
      28             : 
      29             : #define PLUMED_BIAS_INIT(ao) Action(ao),Bias(ao)
      30             : 
      31             : namespace PLMD {
      32             : namespace bias {
      33             : 
      34             : /**
      35             : \ingroup INHERIT
      36             : This is the abstract base class to use for implementing new simulation biases, within it there is
      37             : information as to how to go about implementing a new bias.
      38             : */
      39             : 
      40        2032 : class Bias :
      41             :   public ActionPilot,
      42             :   public ActionWithValue,
      43             :   public ActionWithArguments
      44             : {
      45             : /// the vector of the forces
      46             :   std::vector<double> outputForces;
      47             : /// the pointer to the bias component
      48             :   Value *valueBias;
      49             : protected:
      50             : /// set the force from the bias on argument i, this automatically set the partial derivative of the bias with respect to i to -f
      51             :   void setOutputForce(int i,double f);
      52             : /// set the value of the bias
      53             :   void setBias(double bias);
      54             : public:
      55             :   static void registerKeywords(Keywords&);
      56             :   explicit Bias(const ActionOptions&ao);
      57             :   void apply();
      58             :   unsigned getNumberOfDerivatives();
      59             : };
      60             : 
      61             : inline
      62             : void Bias::setOutputForce(int i,double f) {
      63      146942 :   outputForces[i]=f;
      64       81934 :   valueBias->addDerivative(i,-f);
      65             : }
      66             : 
      67             : inline
      68             : void Bias::setBias(double bias) {
      69       30130 :   valueBias->set(bias);
      70             : }
      71             : 
      72             : inline
      73         586 : unsigned Bias::getNumberOfDerivatives() {
      74         586 :   return getNumberOfArguments();
      75             : }
      76             : 
      77             : }
      78             : }
      79             : 
      80             : #endif
      81             :