PLMD::adjmat::OutputCluster Member List

This is the complete list of members for PLMD::adjmat::OutputCluster, including all inherited members.

Action(const ActionOptions &)PLMD::Actionexplicit
ActionPilot(const ActionOptions &)PLMD::ActionPilotexplicit
activate()PLMD::Actionvirtual
addDependency(Action *)PLMD::Action
adj_listPLMD::adjmat::OutputClusterprivate
apply()PLMD::adjmat::OutputClusterinlinevirtual
atomsinPLMD::adjmat::OutputClusterprivate
beforeUpdate()PLMD::Actioninlinevirtual
calculate()PLMD::adjmat::OutputClusterinlinevirtual
calculateFromPDB(const PDB &)PLMD::Action
calculateNumericalDerivatives(ActionWithValue *a=NULL)PLMD::Actionvirtual
checkNeedsGradients() constPLMD::Actioninlinevirtual
checkNumericalDerivatives() constPLMD::Actioninlinevirtual
checkRead()PLMD::Action
checkUpdate() constPLMD::Action
cite(const std::string &s)PLMD::Action
clearDependencies()PLMD::Action
clearOptions()PLMD::Actionvirtual
cluster_sizesPLMD::adjmat::OutputClusterprivate
clustrPLMD::adjmat::OutputClusterprivate
commPLMD::Action
deactivate()PLMD::Actioninlinevirtual
Dependencies typedefPLMD::Action
error(const std::string &msg) constPLMD::Action
exit(int c=0)PLMD::Action
explore(const unsigned &index, const unsigned &depth)PLMD::adjmat::OutputClusterprivate
explore_dfs(const unsigned &index)PLMD::adjmat::OutputClusterprivate
fclose(FILE *fp)PLMD::Action
fflush()PLMD::Action
filesPLMD::Action
files_iterator typedefPLMD::Action
fopen(const char *path, const char *mode)PLMD::Action
getCPT() constPLMD::Action
getDependencies() constPLMD::Actioninline
getDocumentation() constPLMD::Actionvirtual
getExchangeStep() constPLMD::Action
getKeyword(const std::string &key)PLMD::Action
getLabel() constPLMD::Actioninline
getName() constPLMD::Actioninline
getRestart() constPLMD::Actioninline
getStep() constPLMD::Action
getStride() constPLMD::ActionPilot
getTime() constPLMD::Action
getTimeStep() constPLMD::Action
isActive() constPLMD::Actioninline
isOptionOn(const std::string &s) constPLMD::Actioninline
keywordsPLMD::Action
lockRequests()PLMD::Actioninlinevirtual
logPLMD::Action
makewholePLMD::adjmat::OutputClusterprivate
maxdepthPLMD::adjmat::OutputClusterprivate
maxgoesPLMD::adjmat::OutputClusterprivate
multi_sim_commPLMD::Action
myatomsPLMD::adjmat::OutputClusterprivate
myclustersPLMD::adjmat::OutputClusterprivate
nneighPLMD::adjmat::OutputClusterprivate
number_of_clusterPLMD::adjmat::OutputClusterprivate
ofilePLMD::adjmat::OutputClusterprivate
onStep() constPLMD::ActionPilotvirtual
output_xyzPLMD::adjmat::OutputClusterprivate
OutputCluster(const ActionOptions &)PLMD::adjmat::OutputClusterexplicit
parse(const std::string &key, T &t)PLMD::Action
parseFlag(const std::string &key, bool &t)PLMD::Action
parseNumbered(const std::string &key, const int no, T &t)PLMD::Action
parseNumberedVector(const std::string &key, const int no, std::vector< T > &t)PLMD::Action
parseVector(const std::string &key, std::vector< T > &t)PLMD::Action
plumedPLMD::Action
prepare()PLMD::Actionvirtual
rcut2PLMD::adjmat::OutputClusterprivate
readAtomsFromPDB(const PDB &)PLMD::Actioninlinevirtual
registerKeywords(Keywords &keys)PLMD::adjmat::OutputClusterstatic
runFinalJobs()PLMD::Actioninlinevirtual
setOption(const std::string &s)PLMD::Actionvirtual
unlockRequests()PLMD::Actioninlinevirtual
update()PLMD::adjmat::OutputClustervirtual
visitedPLMD::adjmat::OutputClusterprivate
warning(const std::string &msg)PLMD::Action
which_clusterPLMD::adjmat::OutputClusterprivate
~Action()PLMD::Actionvirtual
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