| calcDistanceFromConfiguration(const unsigned &ifunc, const std::vector< Vector > &pos, const Pbc &pbc, const std::vector< Value * > &arg, const bool &squared) | PLMD::MultiReferenceBase | inline |
| calculateAllDistances(const Pbc &pbc, const std::vector< Value * > &vals, Communicator &comm, Matrix< double > &distances, const bool &squared) | PLMD::MultiReferenceBase | |
| clearFrames() | PLMD::MultiReferenceBase | |
| clearRestOfData() | PLMD::PointWiseMapping | virtual |
| copyFrame(ReferenceConfiguration *frameToCopy) | PLMD::MultiReferenceBase | |
| copyFrameDerivatives(const unsigned &from, const unsigned &to) | PLMD::PointWiseMapping | inline |
| dmat | PLMD::PointWiseMapping | private |
| duplicateFrameList() | PLMD::PointWiseMapping | |
| frames | PLMD::MultiReferenceBase | protected |
| getArgumentDerivative(const unsigned &iframe, const unsigned &jarg) | PLMD::PointWiseMapping | inline |
| getAtomAndArgumentRequirements(std::vector< AtomNumber > &atoms, std::vector< std::string > &args) | PLMD::PointWiseMapping | |
| getAtomDerivatives(const unsigned &iframe, const unsigned &jatom) | PLMD::PointWiseMapping | inline |
| getFrame(const unsigned &iframe) | PLMD::MultiReferenceBase | inline |
| getNumberOfMappedPoints() const | PLMD::PointWiseMapping | inline |
| getNumberOfProperties() const | PLMD::PointWiseMapping | inline |
| getNumberOfReferenceFrames() const | PLMD::MultiReferenceBase | inline |
| getProjectionCoordinate(const unsigned &iframe, const unsigned &jcoord) const | PLMD::PointWiseMapping | inline |
| getPropertyIndex(const std::string &name) const | PLMD::PointWiseMapping | |
| getPropertyName(const unsigned &i) const | PLMD::PointWiseMapping | inline |
| getPropertyValue(const unsigned &iframe, const unsigned &jprop) const | PLMD::PointWiseMapping | inline |
| getVirial(const unsigned &iframe, Tensor &vir) | PLMD::PointWiseMapping | inline |
| getWeight(const unsigned &ifram) const | PLMD::MultiReferenceBase | inline |
| ispath | PLMD::PointWiseMapping | private |
| low_dim | PLMD::PointWiseMapping | private |
| mappingNeedsSetup() const | PLMD::PointWiseMapping | inline |
| modifyDmat() | PLMD::PointWiseMapping | inline |
| MultiReferenceBase(const std::string &type, const bool &checksoff) | PLMD::MultiReferenceBase | |
| parse(const std::string &key, T &val) | PLMD::MultiReferenceBase | protected |
| PointWiseMapping(const std::string &type, const bool &checksoff) | PLMD::PointWiseMapping | |
| print(const std::string &method, const double &time, OFile &afile, const std::string &fmt) | PLMD::PointWiseMapping | |
| property | PLMD::PointWiseMapping | private |
| readFrame(PDB &pdb) | PLMD::MultiReferenceBase | |
| readRestOfFrame() | PLMD::PointWiseMapping | virtual |
| resizeRestOfFrame() | PLMD::PointWiseMapping | virtual |
| setNumberOfAtomsAndArguments(const unsigned &natoms, const unsigned &nargs) | PLMD::PointWiseMapping | |
| setProjectionCoordinate(const unsigned &iframe, const unsigned &jcoord, const double &coord) | PLMD::PointWiseMapping | inline |
| setPropertyNames(const std::vector< std::string > &prop, const bool isp) | PLMD::PointWiseMapping | |
| setWeights(const std::vector< double > &ww) | PLMD::MultiReferenceBase | |
| ~MultiReferenceBase() | PLMD::MultiReferenceBase | virtual |
1.8.7