Calculate a torsional angle.
This command can be used to compute the torsion between four atoms or alternatively to calculate the angle between two vectors projected on the plane orthogonal to an axis.
ATOMS | the four atoms involved in the torsional angle |
AXIS | two atoms that define an axis. You can use this to find the angle in the plane perpendicular to the axis between the vectors specified using the VECTOR1 and VECTOR2 keywords. |
VECTOR1 | two atoms that define a vector. You can use this in combination with VECTOR2 and AXIS |
VECTOR2 | two atoms that define a vector. You can use this in combination with VECTOR1 and AXIS |
NUMERICAL_DERIVATIVES | ( default=off ) calculate the derivatives for these quantities numerically |
NOPBC | ( default=off ) ignore the periodic boundary conditions when calculating distances |
COSINE | ( default=off ) calculate cosine instead of dihedral |
This input tells plumed to print the torsional angle between atoms 1, 2, 3 and 4 on file COLVAR.
t: TORSION ATOMS=1,2,3,4 # this is an alternative, equivalent, definition: # t: TORSION VECTOR1=2,1 AXIS=2,3 VECTOR2=3,4 PRINT ARG=t FILE=COLVAR
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