The LOWER_WALLS and UPPER_WALLS keywords define a wall for the value of one or more collective variables, which limits the region of the phase space accessible during the simulation.
The restraining potential starts acting on the system when the value of the CV is greater (in the case of UPPER_WALLS) or lower (in the case of LOWER_WALLS) than a certain limit \(a_i\) (AT) minus an offset \(o_i\) (OFFSET). The expression for the bias due to the wall is given by:
\( \sum_i {k_i}((x_i-a_i+o_i)/s_i)^e_i \)
\(k_i\) (KAPPA) is an energy constant in internal unit of the code, \(s_i\) (EPS) a rescaling factor and \(e_i\) (EXP) the exponent determining the power law. By default: EXP = 2, EPS = 1.0, OFF = 0.
By default this Action calculates the following quantities. These quanties can be referenced elsewhere in the input by using this Action's label followed by a dot and the name of the quantity required from the list below.
Quantity | Description |
bias | the instantaneous value of the bias potential |
force2 | the instantaneous value of the squared force due to this bias potential |
ARG | the input for this action is the output from one or more other actions. The particular output that you used is referenced using that action of interests label. If the label appears on its own then the value of the relevant Action is taken. If * or *.* appears the information from all arguments is taken. Some actions have multi-component outputs, each component of the output has a specific label so for instance an action labelled dist may have three componets x, y and z. To take just the x component you should use dist.x, if you wish to take all three components then use dist.* |
AT | the positions of the wall. The a_i in the expression for a wall. |
KAPPA | the force constant for the wall. The k_i in the expression for a wall. |
OFFSET | ( default=0.0 ) the offset for the start of the wall. The o_i in the expression for a wall. |
EXP | ( default=2.0 ) the powers for the walls. The e_i in the expression for a wall. |
EPS | ( default=1.0 ) the values for s_i in the expression for a wall |
NUMERICAL_DERIVATIVES | ( default=off ) calculate the derivatives for these quantities numerically |
DISTANCE ATOMS=3,5 LABEL=d1 DISTANCE ATOMS=2,4 LABEL=d2 UPPER_WALLS ARG=d1,d2 AT=1.0,1.5 KAPPA=150.0,150.0 EXP=2,2 EPS=1,1 OFFSET 0,0 LABEL=uwall LOWER_WALLS ARG=d1,d2 AT=0.0,1.0 KAPPA=150.0,150.0 EXP=2,2 EPS=1,1 OFFSET 0,0 LABEL=lwall PRINT ARG=uwall.bias,lwall.bias(See also DISTANCE and PRINT).
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