Command line tool: pathtools

Module	mapping
Description	Input
print out a description of the keywords for an action in html	command line args

Details

Text from manual goes here

Syntax

The following table describes the command line options that are available for this tool

Keyword	Description
--help/-h	print this help
--start	a pdb file that contains the structure for the initial frame of your path
--end	a pdb file that contains the structure for the final frame of your path
--path	a pdb file that contains an initial path in which the frames are not equally spaced
--arg	the arguments that should be read in from the pdb files
--fixed	the frames to fix when constructing the path using --path
--metric	the measure to use to calculate the distance between frames
--out	the name of the file on which to output your path
--arg-fmt	the format to use for argument values in your frames
--tolerance	the tolerance to use for the algorithm that is used to re-parameterize the path
--nframes-before-start	the number of frames to include in the path before the first frame
--nframes	the number of frames between the start and end frames in your path
--nframes-after-end	the number of frames to put after the last frame of your path