Stderr for source: parsing.md_working_4.dat
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#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): ********** STACK DUMP ********** /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD9ExceptionC1Ev+0x22b) [0x7f8099a92ccb] /home/runner/opt/lib/libplumedKernel.so(+0x4d1d6c) [0x7f80990d1d6c] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD5OFile4openERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x24b) [0x7f8099addd2b] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD7cltools6DriverIdE4mainEP8_IO_FILES4_RNS_12CommunicatorE+0x827a) [0x7f809914365a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3runEiPPcP8_IO_FILES4_RNS_12CommunicatorE+0x72a) [0x7f80993e67aa] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x53e) [0x7f80993e92be] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x12d4) [0x7f8099436d54] /home/runner/opt/lib/libplumedKernel.so(+0x840541) [0x7f8099440541] plumed(+0x1e1e7) [0x5555ec2551e7] plumed(+0x14d41) [0x5555ec24bd41] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f8098429d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f8098429e40] plumed(+0x14eb5) [0x5555ec24beb5] ********** END STACK DUMP ********** (tools/OFile.cpp:359) void PLMD::OFile::backupFile(const string&, const string&) +++ assertion failed: check==0 renaming ./parsing.md_working_4.dat.json into ./bck.0.parsing.md_working_4.dat.json failed for reason: No such file or directory [fv-az1383-461:41393] *** Process received signal *** [fv-az1383-461:41393] Signal: Aborted (6) [fv-az1383-461:41393] Signal code: (-6) [fv-az1383-461:41393] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f8098442520] [fv-az1383-461:41393] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f80984969fc] [fv-az1383-461:41393] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f8098442476] [fv-az1383-461:41393] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f80984287f3] [fv-az1383-461:41393] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f80988a2b9e] [fv-az1383-461:41393] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f80988ae20c] [fv-az1383-461:41393] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f80988ae277] [fv-az1383-461:41393] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f80988ae52b] [fv-az1383-461:41393] [ 8] plumed(+0x14254)[0x5555ec24b254] [fv-az1383-461:41393] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f8098429d90] [fv-az1383-461:41393] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f8098429e40] [fv-az1383-461:41393] [11] plumed(+0x14eb5)[0x5555ec24beb5] [fv-az1383-461:41393] *** End of error message *** -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 0 on node fv-az1383-461 exited on signal 6 (Aborted). --------------------------------------------------------------------------