PLUMED Version 2.11

PLUMED is a composed of a modules that contain a variety of different functionalities but that share a common basic syntax. You can find all the modules that are available within PLUMED in the following graph. The graph also shows the interdependencies between the various modules. If you click on the modules in the graph module-specific information will open. The colors of the nodes in the graph below indicate whether the module is always compiled (blue), on by default (green) or off by default (red). If you need a feature from a module that is by default off you need to explicitly tell PLUMED to include it during the configure stage by using:

./configure --enable-module=module-name

Each module contains implementations of a number of actions. You can find a list of all the actions implemented in in PLUMED here.

You can view the information about the modules in the graph above in a table by following the following link.

bias

generic

mapping

multicolvar

secondarystructure

colvar

annfunc

vatom

volumes

dimred

symfunc

function

crystdistrib

adjmat

isdb

clusters

landmarks

valtools

gridtools

matrixtools

refdist

core

envsim

funnel

membranefusion

pamm

maze

piv

pytorch

s2cm

sizeshape

sprint

setup

metatensor

sasa

contour

fourier

wham

ves

drr

opes

eds

fisst

logmfd