Stderr for source: WHAM.md_working_1.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): ********** STACK DUMP ********** /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD9ExceptionC1Ev+0x22b) [0x7f6d4bc952eb] /home/runner/opt/lib/libplumedKernel.so(+0x4d0d6c) [0x7f6d4b2d0d6c] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD5OFile4openERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x24b) [0x7f6d4bce034b] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD7cltools6DriverIdE4mainEP8_IO_FILES4_RNS_12CommunicatorE+0x2b79) [0x7f6d4b339139] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3runEiPPcP8_IO_FILES4_RNS_12CommunicatorE+0x72a) [0x7f6d4b5e8dca] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x53e) [0x7f6d4b5eb8de] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x12d4) [0x7f6d4b639374] /home/runner/opt/lib/libplumedKernel.so(+0x842b61) [0x7f6d4b642b61] plumed(+0x1e1e7) [0x564e5cda01e7] plumed(+0x14d41) [0x564e5cd96d41] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7f6d4a629d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7f6d4a629e40] plumed(+0x14eb5) [0x564e5cd96eb5] ********** END STACK DUMP ********** (tools/OFile.cpp:359) void PLMD::OFile::backupFile(const string&, const string&) +++ assertion failed: check==0 renaming ./WHAM.md_working_1.dat_values.json into ./bck.0.WHAM.md_working_1.dat_values.json failed for reason: No such file or directory [fv-az532-337:51340] *** Process received signal *** [fv-az532-337:51340] Signal: Aborted (6) [fv-az532-337:51340] Signal code: (-6) [fv-az532-337:51340] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f6d4a642520] [fv-az532-337:51340] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f6d4a6969fc] [fv-az532-337:51340] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f6d4a642476] [fv-az532-337:51340] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f6d4a6287f3] [fv-az532-337:51340] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7f6d4aaa2b9e] [fv-az532-337:51340] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7f6d4aaae20c] [fv-az532-337:51340] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7f6d4aaae277] [fv-az532-337:51340] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7f6d4aaae52b] [fv-az532-337:51340] [ 8] plumed(+0x14254)[0x564e5cd96254] [fv-az532-337:51340] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f6d4a629d90] [fv-az532-337:51340] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f6d4a629e40] [fv-az532-337:51340] [11] plumed(+0x14eb5)[0x564e5cd96eb5] [fv-az532-337:51340] *** End of error message *** -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun noticed that process rank 3 with PID 0 on node fv-az532-337 exited on signal 6 (Aborted). --------------------------------------------------------------------------