Stderr for source: GYRATION.md_working_7.dat
Download: zipped raw stdout - zipped raw stderr
#! Only the first 1000 rows of the error file are shown below #! To inspect the full error file, please download the zipped raw stderr file above terminate called after throwing an instance of 'PLMD::Plumed::ExceptionError' what(): ********** STACK DUMP ********** /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD9ExceptionC1Ev+0x22b) [0x7fe32c4952eb] /home/runner/opt/lib/libplumedKernel.so(+0x38dc6a) [0x7fe32b98dc6a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD16ActionWithVector18buildArgumentStoreERKj+0x1041) [0x7fe32bde18a1] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD8function16FunctionOfVectorINS0_6CustomEEC1ERKNS_13ActionOptionsE+0x6ab) [0x7fe32bf4284b] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_8function16FunctionOfVectorINS1_6CustomEEEE6createERKNS_13ActionOptionsE+0x27) [0x7fe32bf42a97] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7fe32bda5323] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7fe32be30f1a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionShortcut13readInputLineERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb+0x1b9) [0x7fe32bdb26e9] /home/runner/opt/lib/libplumedKernel.so(+0x9414e3) [0x7fe32bf414e3] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD8function16FunctionShortcutINS0_6CustomEEC1ERKNS_13ActionOptionsE+0x26a) [0x7fe32bf41f1a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_8function16FunctionShortcutINS1_6CustomEEEE6createERKNS_13ActionOptionsE+0x27) [0x7fe32bf42167] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7fe32bda5323] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7fe32be30f1a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionShortcut13readInputLineERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb+0x1b9) [0x7fe32bdb26e9] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD5vatom14CenterShortcutC1ERKNS_13ActionOptionsE+0x14cf) [0x7fe32c557d9f] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_5vatom14CenterShortcutEE6createERKNS_13ActionOptionsE+0x27) [0x7fe32c55c9d7] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7fe32bda5323] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7fe32be30f1a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionShortcut13readInputLineERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb+0x1b9) [0x7fe32bdb26e9] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD6colvar16GyrationShortcutC1ERKNS_13ActionOptionsE+0xaa2) [0x7fe32bd184e2] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD18ActionRegistrationINS_6colvar16GyrationShortcutEE6createERKNS_13ActionOptionsE+0x27) [0x7fe32bd1cc17] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD14ActionRegister6createERKSt6vectorIPvSaIS2_EERKNS_13ActionOptionsE+0x263) [0x7fe32bda5323] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain14readInputWordsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EERKb+0x2da) [0x7fe32be30f1a] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD7cltools6DriverIdE4mainEP8_IO_FILES4_RNS_12CommunicatorE+0x89e4) [0x7fe32bb3efa4] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3runEiPPcP8_IO_FILES4_RNS_12CommunicatorE+0x72a) [0x7fe32bde8dca] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10CLToolMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x53e) [0x7fe32bdeb8de] /home/runner/opt/lib/libplumedKernel.so(_ZN4PLMD10PlumedMain3cmdESt17basic_string_viewIcSt11char_traitsIcEERKNS_11TypesafePtrE+0x12d4) [0x7fe32be39374] /home/runner/opt/lib/libplumedKernel.so(+0x842b61) [0x7fe32be42b61] plumed(+0x1e1e7) [0x55d03862c1e7] plumed(+0x14d41) [0x55d038622d41] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90) [0x7fe32ae29d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80) [0x7fe32ae29e40] plumed(+0x14eb5) [0x55d038622eb5] ********** END STACK DUMP ********** (core/ActionWithVector.cpp:382) PLMD::ActionWithVector* PLMD::ActionWithVector::getActionWithDerivatives(PLMD::ActionWithVector*) +++ assertion failed: action_to_do_before [fv-az532-337:46681] *** Process received signal *** [fv-az532-337:46681] Signal: Aborted (6) [fv-az532-337:46681] Signal code: (-6) [fv-az532-337:46681] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe32ae42520] [fv-az532-337:46681] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fe32ae969fc] [fv-az532-337:46681] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fe32ae42476] [fv-az532-337:46681] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fe32ae287f3] [fv-az532-337:46681] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xa2b9e)[0x7fe32b2a2b9e] [fv-az532-337:46681] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae20c)[0x7fe32b2ae20c] [fv-az532-337:46681] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xae277)[0x7fe32b2ae277] [fv-az532-337:46681] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_rethrow+0x4b)[0x7fe32b2ae52b] [fv-az532-337:46681] [ 8] plumed(+0x14254)[0x55d038622254] [fv-az532-337:46681] [ 9] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fe32ae29d90] [fv-az532-337:46681] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fe32ae29e40] [fv-az532-337:46681] [11] plumed(+0x14eb5)[0x55d038622eb5] [fv-az532-337:46681] *** End of error message ***