LCOV - code coverage report
Current view: top level - tools - RMSD.cpp (source / functions) Hit Total Coverage
Test: plumed test coverage Lines: 540 735 73.5 %
Date: 2024-10-11 08:09:47 Functions: 42 80 52.5 %

Function Name Sort by function name Hit count Sort by hit count
_ZN4PLMD12RMSDCoreData10doCoreCalcEbbb 6960
_ZN4PLMD12RMSDCoreData11getDistanceEb 52152
_ZN4PLMD12RMSDCoreData18getPositionsCenterEv 210
_ZN4PLMD12RMSDCoreData18getReferenceCenterEv 0
_ZN4PLMD12RMSDCoreData20getCenteredPositionsEv 5195
_ZN4PLMD12RMSDCoreData20getCenteredReferenceEv 4985
_ZN4PLMD12RMSDCoreData22getDDistanceDPositionsEv 50850
_ZN4PLMD12RMSDCoreData22getDDistanceDReferenceEv 1
_ZN4PLMD12RMSDCoreData22getDRotationDPositionsEb 5195
_ZN4PLMD12RMSDCoreData22getDRotationDReferenceEb 0
_ZN4PLMD12RMSDCoreData26getDDistanceDReferenceSOMAEv 0
_ZN4PLMD12RMSDCoreData28doCoreCalcWithCloseStructureEbbRKNS_13TensorGenericILj3ELj3EEES4_RSt5arrayIS5_IS2_Lm3EELm3EE 45192
_ZN4PLMD12RMSDCoreData30getAlignedPositionsToReferenceEv 4985
_ZN4PLMD12RMSDCoreData30getAlignedReferenceToPositionsEv 0
_ZN4PLMD12RMSDCoreData37getRotationMatrixPositionsToReferenceEv 5195
_ZN4PLMD12RMSDCoreData37getRotationMatrixReferenceToPositionsEv 1764
_ZN4PLMD4RMSD11getDisplaceEv 0
_ZN4PLMD4RMSD11setDisplaceERKSt6vectorIdSaIdEEb 1575
_ZN4PLMD4RMSD12getReferenceEv 45192
_ZN4PLMD4RMSD12setReferenceERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EE 46783
_ZN4PLMD4RMSD14calc_DDistDRefERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERS5_S8_b 1
_ZN4PLMD4RMSD16calc_FitElementsERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERNS_13TensorGenericILj3ELj3EEERNS_6MatrixIS5_EERS5_RS3_RKb 210
_ZN4PLMD4RMSD18calc_Rot_DRotDRr01ERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERNS_13TensorGenericILj3ELj3EEERSt5arrayISB_IS9_Lm3EELm3EEb 1092
_ZN4PLMD4RMSD20optimalAlignment_FitILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EERSA_RS8_b 0
_ZN4PLMD4RMSD20optimalAlignment_FitILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EERSA_RS8_b 0
_ZN4PLMD4RMSD20optimalAlignment_FitILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EERSA_RS8_b 60
_ZN4PLMD4RMSD20optimalAlignment_FitILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EERSA_RS8_b 150
_ZN4PLMD4RMSD27calc_DDistDRef_Rot_DRotDPosERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERS5_S8_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixIS5_EEb 0
_ZN4PLMD4RMSD27calculateWithCloseStructureERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERS5_RKNS_13TensorGenericILj3ELj3EEESC_RSt5arrayISD_ISA_Lm3EELm3EEb 45192
_ZN4PLMD4RMSD36calc_DDistDRef_Rot_DRotDPos_DRotDRefERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERS5_S8_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixIS5_EESE_b 0
_ZN4PLMD4RMSD3setERKNS_3PDBERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbb 1108
_ZN4PLMD4RMSD3setERKSt6vectorIdSaIdEES5_RKS1_INS_13VectorGenericILj3EEESaIS7_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbb 1575
_ZN4PLMD4RMSD5clearEv 471
_ZN4PLMD4RMSD7setTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE 46767
_ZN4PLMD4RMSD8calc_RotERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERS5_RNS_13TensorGenericILj3ELj3EEEb 672
_ZN4PLMD4RMSD8getAlignEv 0
_ZN4PLMD4RMSD8setAlignERKSt6vectorIdSaIdEEbb 1575
_ZN4PLMD4RMSD9calc_SOMAERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERS5_S8_b 0
_ZN4PLMD4RMSD9getMethodB5cxx11Ev 5
_ZN4PLMD4RMSDC2Ev 46803
_ZNK4PLMD12RMSDCoreData17getDRotationDRr01Ev 1092
_ZNK4PLMD4RMSD15simpleAlignmentERKSt6vectorIdSaIdEES5_RKS1_INS_13VectorGenericILj3EEESaIS7_EESB_RS9_SC_b 160
_ZNK4PLMD4RMSD16calc_PCAelementsERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERS5_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixIS5_EES8_S8_S8_RKb 4985
_ZNK4PLMD4RMSD16optimalAlignmentILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_b 2
_ZNK4PLMD4RMSD16optimalAlignmentILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_b 192638
_ZNK4PLMD4RMSD16optimalAlignmentILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_b 112
_ZNK4PLMD4RMSD16optimalAlignmentILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_b 356282
_ZNK4PLMD4RMSD20optimalAlignment_PCAILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_SD_RNS_13TensorGenericILj3ELj3EEESD_RNS_6MatrixISA_EEb 0
_ZNK4PLMD4RMSD20optimalAlignment_PCAILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_SD_RNS_13TensorGenericILj3ELj3EEESD_RNS_6MatrixISA_EEb 0
_ZNK4PLMD4RMSD20optimalAlignment_PCAILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_SD_RNS_13TensorGenericILj3ELj3EEESD_RNS_6MatrixISA_EEb 0
_ZNK4PLMD4RMSD20optimalAlignment_PCAILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_SD_RNS_13TensorGenericILj3ELj3EEESD_RNS_6MatrixISA_EEb 4985
_ZNK4PLMD4RMSD20optimalAlignment_RotILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_RNS_13TensorGenericILj3ELj3EEEb 0
_ZNK4PLMD4RMSD20optimalAlignment_RotILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_RNS_13TensorGenericILj3ELj3EEEb 0
_ZNK4PLMD4RMSD20optimalAlignment_RotILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_RNS_13TensorGenericILj3ELj3EEEb 0
_ZNK4PLMD4RMSD20optimalAlignment_RotILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_RNS_13TensorGenericILj3ELj3EEEb 672
_ZNK4PLMD4RMSD21optimalAlignment_SOMAILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_b 0
_ZNK4PLMD4RMSD21optimalAlignment_SOMAILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_b 0
_ZNK4PLMD4RMSD21optimalAlignment_SOMAILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_b 0
_ZNK4PLMD4RMSD21optimalAlignment_SOMAILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_b 0
_ZNK4PLMD4RMSD26optimalAlignment_DDistDRefILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_b 0
_ZNK4PLMD4RMSD26optimalAlignment_DDistDRefILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_b 0
_ZNK4PLMD4RMSD26optimalAlignment_DDistDRefILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_b 1
_ZNK4PLMD4RMSD26optimalAlignment_DDistDRefILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_b 0
_ZNK4PLMD4RMSD30optimalAlignment_Rot_DRotDRr01ILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RNS_13TensorGenericILj3ELj3EEERSt5arrayISG_ISE_Lm3EELm3EEb 0
_ZNK4PLMD4RMSD30optimalAlignment_Rot_DRotDRr01ILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RNS_13TensorGenericILj3ELj3EEERSt5arrayISG_ISE_Lm3EELm3EEb 0
_ZNK4PLMD4RMSD30optimalAlignment_Rot_DRotDRr01ILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RNS_13TensorGenericILj3ELj3EEERSt5arrayISG_ISE_Lm3EELm3EEb 0
_ZNK4PLMD4RMSD30optimalAlignment_Rot_DRotDRr01ILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RNS_13TensorGenericILj3ELj3EEERSt5arrayISG_ISE_Lm3EELm3EEb 1092
_ZNK4PLMD4RMSD34optimalAlignmentWithCloseStructureILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_RKNS_13TensorGenericILj3ELj3EEESH_RSt5arrayISI_ISF_Lm3EELm3EEb 0
_ZNK4PLMD4RMSD34optimalAlignmentWithCloseStructureILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_RKNS_13TensorGenericILj3ELj3EEESH_RSt5arrayISI_ISF_Lm3EELm3EEb 0
_ZNK4PLMD4RMSD34optimalAlignmentWithCloseStructureILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_RKNS_13TensorGenericILj3ELj3EEESH_RSt5arrayISI_ISF_Lm3EELm3EEb 0
_ZNK4PLMD4RMSD34optimalAlignmentWithCloseStructureILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_RKNS_13TensorGenericILj3ELj3EEESH_RSt5arrayISI_ISF_Lm3EELm3EEb 45192
_ZNK4PLMD4RMSD39optimalAlignment_DDistDRef_Rot_DRotDPosILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EEb 0
_ZNK4PLMD4RMSD39optimalAlignment_DDistDRef_Rot_DRotDPosILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EEb 0
_ZNK4PLMD4RMSD39optimalAlignment_DDistDRef_Rot_DRotDPosILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EEb 0
_ZNK4PLMD4RMSD39optimalAlignment_DDistDRef_Rot_DRotDPosILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EEb 0
_ZNK4PLMD4RMSD48optimalAlignment_DDistDRef_Rot_DRotDPos_DRotDRefILb0ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EESJ_b 0
_ZNK4PLMD4RMSD48optimalAlignment_DDistDRef_Rot_DRotDPos_DRotDRefILb0ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EESJ_b 0
_ZNK4PLMD4RMSD48optimalAlignment_DDistDRef_Rot_DRotDPos_DRotDRefILb1ELb0EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EESJ_b 0
_ZNK4PLMD4RMSD48optimalAlignment_DDistDRef_Rot_DRotDPos_DRotDRefILb1ELb1EEEdRKSt6vectorIdSaIdEES6_RKS2_INS_13VectorGenericILj3EEESaIS8_EESC_RSA_SD_RNS_13TensorGenericILj3ELj3EEERNS_6MatrixISA_EESJ_b 0
_ZNK4PLMD4RMSD9calculateERKSt6vectorINS_13VectorGenericILj3EEESaIS3_EERS5_b 332887

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