Line data    Source code

       1             : /* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
       2             :    Copyright (c) 2016-2021 The VES code team
       3             :    (see the PEOPLE-VES file at the root of this folder for a list of names)
       4             : 
       5             :    See http://www.ves-code.org for more information.
       6             : 
       7             :    This file is part of VES code module.
       8             : 
       9             :    The VES code module is free software: you can redistribute it and/or modify
      10             :    it under the terms of the GNU Lesser General Public License as published by
      11             :    the Free Software Foundation, either version 3 of the License, or
      12             :    (at your option) any later version.
      13             : 
      14             :    The VES code module is distributed in the hope that it will be useful,
      15             :    but WITHOUT ANY WARRANTY; without even the implied warranty of
      16             :    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
      17             :    GNU Lesser General Public License for more details.
      18             : 
      19             :    You should have received a copy of the GNU Lesser General Public License
      20             :    along with the VES code module.  If not, see <http://www.gnu.org/licenses/>.
      21             : +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
      22             : 
      23             : #include "BasisFunctions.h"
      24             : 
      25             : #include "core/ActionRegister.h"
      26             : 
      27             : 
      28             : namespace PLMD {
      29             : namespace ves {
      30             : 
      31             : //+PLUMEDOC VES_BASISF BF_SINE
      32             : /*
      33             : Fourier sine basis functions.
      34             : 
      35             : Use as basis functions Fourier sine series defined on a periodic interval.
      36             : You need to provide the periodic interval \f$[a,b]\f$
      37             : on which the basis functions are to be used, and the order of the
      38             : expansion \f$N\f$ (i.e. the highest Fourier sine mode used).
      39             : The total number of basis functions is \f$N+1\f$ as
      40             : the constant \f$f_{0}(x)=1\f$ is also included.
      41             : These basis functions should only be used for periodic CVs.
      42             : They can be useful if the periodic function being expanded is an
      43             : odd function, i.e. \f$F(-x)=-F(x)\f$.
      44             : 
      45             : The Fourier sine basis functions are given by
      46             : \f{align}{
      47             : f_{0}(x)    &= 1 \\
      48             : f_{1}(x)    &= sin(\frac{2\pi }{P} x) \\
      49             : f_{2}(x)    &= sin(2 \cdot \frac{2\pi}{P} x) \\
      50             : f_{3}(x)    &= sin(3 \cdot \frac{2\pi}{P} x) \\
      51             : & \vdots \\
      52             : f_{n}(x) &= sin(n \cdot \frac{2\pi}{P} x) \\
      53             : & \vdots \\
      54             : f_{N}(x)   &= sin(N \cdot \frac{2\pi}{P} x) \\
      55             : \f}
      56             : where \f$P=(b-a)\f$ is the periodicity of the interval.
      57             : They are orthogonal over the interval \f$[a,b]\f$
      58             : \f[
      59             : \int_{a}^{b} dx \, f_{n}(x)\, f_{m}(x)  =
      60             : \begin{cases}
      61             : 0 & n \neq m \\
      62             : (b-a) & n = m = 0 \\
      63             : (b-a)/2 & n = m \neq 0
      64             : \end{cases}.
      65             : \f]
      66             : 
      67             : \par Examples
      68             : 
      69             : Here we employ a Fourier sine expansion of order 10 over the periodic interval
      70             : \f$-\pi\f$ to \f$+\pi\f$.
      71             : This results in a total number of 11 basis functions.
      72             : The label used to identify  the basis function action can then be
      73             : referenced later on in the input file.
      74             : \plumedfile
      75             : BF_SINE MINIMUM=-pi MAXIMUM=+pi ORDER=10 LABEL=bfS
      76             : \endplumedfile
      77             : 
      78             : \par Examples
      79             : 
      80             : */
      81             : //+ENDPLUMEDOC
      82             : 
      83             : class BF_Sine : public BasisFunctions {
      84             :   void setupLabels() override;
      85             :   void setupUniformIntegrals() override;
      86             : public:
      87             :   static void registerKeywords(Keywords&);
      88             :   explicit BF_Sine(const ActionOptions&);
      89             :   void getAllValues(const double, double&, bool&, std::vector<double>&, std::vector<double>&) const override;
      90             : };
      91             : 
      92             : 
      93             : PLUMED_REGISTER_ACTION(BF_Sine,"BF_SINE")
      94             : 
      95             : 
      96           6 : void BF_Sine::registerKeywords(Keywords& keys) {
      97           6 :   BasisFunctions::registerKeywords(keys);
      98           6 : }
      99             : 
     100             : 
     101           4 : BF_Sine::BF_Sine(const ActionOptions&ao):
     102           4 :   PLUMED_VES_BASISFUNCTIONS_INIT(ao)
     103             : {
     104           4 :   setNumberOfBasisFunctions(getOrder()+1);
     105           8 :   setIntrinsicInterval("-pi","+pi");
     106             :   setPeriodic();
     107             :   setIntervalBounded();
     108           4 :   setType("trigonometric_sin");
     109           4 :   setDescription("Sine");
     110           4 :   setupBF();
     111           4 :   checkRead();
     112           4 : }
     113             : 
     114             : 
     115        9229 : void BF_Sine::getAllValues(const double arg, double& argT, bool& inside_range, std::vector<double>& values, std::vector<double>& derivs) const {
     116             :   // plumed_assert(values.size()==numberOfBasisFunctions());
     117             :   // plumed_assert(derivs.size()==numberOfBasisFunctions());
     118        9229 :   inside_range=true;
     119        9229 :   argT=translateArgument(arg, inside_range);
     120        9229 :   values[0]=1.0;
     121        9229 :   derivs[0]=0.0;
     122      101519 :   for(unsigned int i=1; i < getOrder()+1; i++) {
     123       92290 :     double io = i;
     124       92290 :     double cos_tmp = cos(io*argT);
     125       92290 :     double sin_tmp = sin(io*argT);
     126       92290 :     values[i] = sin_tmp;
     127       92290 :     derivs[i] = io*cos_tmp*intervalDerivf();
     128             :   }
     129        9229 :   if(!inside_range) {
     130         960 :     for(unsigned int i=0; i<derivs.size(); i++) {derivs[i]=0.0;}
     131             :   }
     132        9229 : }
     133             : 
     134             : 
     135           4 : void BF_Sine::setupLabels() {
     136           4 :   setLabel(0,"1");
     137          44 :   for(unsigned int i=1; i < getOrder()+1; i++) {
     138          40 :     std::string is; Tools::convert(i,is);
     139          80 :     setLabel(i,"sin("+is+"*s)");
     140             :   }
     141           4 : }
     142             : 
     143             : 
     144           3 : void BF_Sine::setupUniformIntegrals() {
     145           3 :   setAllUniformIntegralsToZero();
     146             :   setUniformIntegral(0,1.0);
     147           3 : }
     148             : 
     149             : 
     150             : }
     151             : }